New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2403799 =	44 (0.680)	4 (0.070)	4/244	NT	8.3%	coding (426/1209 nt)	PP_2106	ammonium transporter
	?	NC_002947	2403860 =	48 (0.800)					coding (487/1209 nt)	PP_2106	ammonium transporter

GGTCAAGTGTTTCTTCCTGCTGACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGC  >  NC_002947/2403652‑2403944                                                                                                                                                    |                                                                                                                                                   gcccagcgccagaaagggaatgctcgatggcgcaaaagccaccaaacgcccatcgcggtaccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcGt                                                                                                                                                   >  7:96222‑M1/148‑149 (MQ=255)  gTCAAGTGTTTCTTCCTGCTGACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGggtgtggtgt                                                                                                                                                   <  5:78996/148‑1 (MQ=255)  cccagcgccagaaagggaatgctcgatggcgcaaaagccaccaaacgcccatcgcggtaccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcGTg                                                                                                                                                  <  2:141268‑M1/3‑1 (MQ=255)   tCAAGTGTTTCTTCCTGCTGACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGgtgtggtgtg                                                                                                                                                  >  1:303939/1‑148 (MQ=255)     agcgccagaaagggaatgctcgatggcgcaaaagccaccaaacgcccatcgcggtaccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcGTGGaa                                                                                                                                               <  4:31193‑M1/6‑1 (MQ=255)     aaGTGTTTCTTCCTGCTGACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGaa                                                                                                                                               <  4:26250/149‑1 (MQ=255)       gtgtTTCTTCCTGCTGACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACg                                                                                                                                             >  4:315617/1‑149 (MQ=255)            gaaagggaatgctcgatggcgcaaaagccaccaaacgcccatcgcggtaccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcg                                                                                                                                                    <  8:12717‑M1/1‑1 (MQ=255)            gaaagggaatgctcgatggcgcaaaagccaccaaacgcccatcgcggtaccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcg                                                                                                                                                    >  7:12717‑M1/137‑137 (MQ=255)                 ctgctgACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTgg                                                                                                                                    <  8:32071/148‑1 (MQ=255)                    ctgACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGc                                                                                                                                  <  4:1193/147‑1 (MQ=255)                    ctgACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGc                                                                                                                                  <  2:303939/147‑1 (MQ=255)                         cTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAgg                                                                                                                           >  5:352082/1‑149 (MQ=255)                          ttCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGc                                                                                                                          >  3:214394/1‑149 (MQ=255)                                     gATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAgg                                                                                                               <  4:282346/149‑1 (MQ=255)                                       ttCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGc                                                                                                              <  1:293321/148‑1 (MQ=255)                                       ttCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGc                                                                                                              >  2:293321/1‑148 (MQ=255)                                            aaacgcccatcgcggtaccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCtt                                                                                                        <  6:190592‑M1/45‑1 (MQ=255)                                                    ctcCGGGGGCATTGCCGAGCGGGTGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTgg                                                                                                                                    >  5:56268/1‑113 (MQ=255)                                                    ctcCGGGGGCATTGCCGAGCGGGTGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTgg                                                                                                                                    <  6:56268/113‑1 (MQ=255)                                                           taccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCa                                                                                        >  8:13240‑M1/90‑149 (MQ=255)                                                           ggCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCa                                                                                        >  7:104185/1‑149 (MQ=255)                                                             ccgccctcggcgcgcgcccagcaacagcaccgccgccagcgccagccagcccccgatggcgtgtaccaccacagacccggcaaagtcGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCAc                                                                                       >  5:247672‑M1/88‑148 (MQ=255)                                                             ccgcccacggcgcgcgcccagcaacagcaccgccgccagcgccagccagccccccatggcgtgtaccaccacagacccggcaaagtcGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACg                                                                                      >  5:190592‑M1/88‑149 (MQ=255)                                                                  ccGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACttt                                                                                 >  5:266424/1‑149 (MQ=255)                                                                  ccGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACttt                                                                                 >  8:119393/1‑149 (MQ=255)                                                                     aGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGcc                                                                              >  3:64335/1‑149 (MQ=255)                                                                          gcgcGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCa                                                                                        >  7:190573/1‑134 (MQ=255)                                                                          gcgcGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCa                                                                                        <  8:190573/134‑1 (MQ=255)                                                                           cgcgGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCt                                                                        <  6:266424/149‑1 (MQ=255)                                                                            gcgGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCtg                                                                       >  2:222591/1‑149 (MQ=255)                                                                                    tGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCCCCGTTCCACGACTTTGCCGGGTCTGTGGTGGTa                                                               >  6:208015/1‑149 (MQ=255)                                                                                      ccGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTaca                                                             >  4:47961/1‑149 (MQ=255)                                                                                      ccGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTaca                                                             >  3:31193/1‑149 (MQ=255)                                                                                       cGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTgtgg                                                                    >  5:316181/1‑141 (MQ=255)                                                                                       cGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTgtgg                                                                    <  6:316181/141‑1 (MQ=255)                                                                                                  gcTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATgggggg                                                 >  6:305788/1‑149 (MQ=255)                                                                                                          gTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTCATGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGgctggctg                                          <  1:116241/149‑1 (MQ=255)                                                                                                           ttGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCATGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCtggctggc                                        >  1:85264/1‑149 (MQ=255)                                                                                                           ttGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCtggctggc                                        <  3:153145/149‑1 (MQ=255)                                                                                                                  tGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGctggcgctggcg                                 >  5:396023/1‑149 (MQ=255)                                                                                                                   ggCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTggcgg                                >  3:235776/1‑149 (MQ=255)                                                                                                                    gCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTggcgg                                <  3:47961/148‑1 (MQ=255)                                                                                                                         cGTCTATCCGTTCTTCGAGGGTGTGGGGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTg                           <  7:177217/148‑1 (MQ=255)                                                                                                                          gTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCt                         >  2:373543/1‑149 (MQ=255)                                                                                                                               tCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGc                    >  4:161573/1‑149 (MQ=255)                                                                                                                                 cGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTg                  >  4:91744/1‑149 (MQ=255)                                                                                                                                 cGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACACTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTg                  >  2:35596/1‑149 (MQ=255)                                                                                                                                  gTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATggg                                                    >  2:318483/1‑114 (MQ=255)                                                                                                                                  gTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATggg                                                    <  1:318483/114‑1 (MQ=255)                                                                                                                                  gTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTgg                 >  1:362767/1‑149 (MQ=255)                                                                                                                                  gTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTgg                 <  1:222591/149‑1 (MQ=255)                                                                                                                                        cGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACACTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGgcgc             <  1:35596/147‑1 (MQ=255)                                                                                                                                         gAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGgcgcgc           <  3:91744/148‑1 (MQ=255)                                                                                                                                            ggtgtggtgtGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCg       >  5:195834/1‑149 (MQ=255)                                                                                                                                                tggtgtggAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGACGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTggg   >  1:327705/1‑149 (MQ=255)                                                                                                                                                  gtgtggAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGc  <  3:315617/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GGTCAAGTGTTTCTTCCTGCTGACCTTCGCGGCGGCGATTCCGGCGATCATCTCCGGGGGCATTGCCGAGCGGGCGCGGTTCGTGCCGCAGTTGTGCGCTACGGCGTTGATCGTGGCGTTCGTCTATCCGTTCTTCGAGGGTGTGGTGTGGAACGGTAATCTGGGCCTACAGGCTTGGCTGCAGGCACGCTTC‑GGCGCACCGTTCCACGACTTTGCCGGGTCTGTGGTGGTACACGCCATGGGGGGCTGGCTGGCGCTGGCGGCGGTGCTGTTGCTGGGCGCGCGCCGTGGGC  >  NC_002947/2403652‑2403944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.