New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2692656	63 (0.970)	4 (0.060)	4/252	NT	6.1%	coding (280/504 nt)	PP_2360	type I pili subunit CsuA/B
	?	NC_002947	= 2692684	62 (1.000)					coding (308/504 nt)	PP_2360	type I pili subunit CsuA/B

CCAGCTACGGCACGCTCGATTATGGCTCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTCCGACCCGACGGCGATCAAGCTACCGGTGTA  >  NC_002947/2692510‑2692804                                                                                                                                                   |                                                                                                                                                     ccAGCTACGGCACGCTCGATTATGGCTCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGACAGt                                                                                                                                                    >  7:174393/1‑149 (MQ=255)     cTACGGCACGCTCGATTATGGCTGGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGc                                                                                                                                                 <  8:174393/148‑1 (MQ=255)                  gATTATGGCTCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGaa                                                                                                                                   <  6:103974/149‑1 (MQ=255)                   aTTATGGCTCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAg                                                                                                                                  >  8:384394/1‑149 (MQ=255)                          cTCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCAc                                                                                                                             >  6:10119/1‑147 (MQ=255)                          cTCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCAc                                                                                                                             >  8:280501/1‑147 (MQ=255)                           tCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCActggtgcgcttcaggttgcgtgtgccac                                                                                                                          >  7:141567‑M1/1‑121 (MQ=255)                           tCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGaa                                                                                                                                   >  7:317810/1‑140 (MQ=255)                           tCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGaa                                                                                                                                   <  8:317810/140‑1 (MQ=255)                           tCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAgcg                                                                                                                                >  7:181987/1‑143 (MQ=255)                           tCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAgcg                                                                                                                                <  8:181987/143‑1 (MQ=255)                           tCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAg                                                                                                                          >  3:293454/1‑149 (MQ=255)                            cGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGt                                                                                                                         <  4:102516‑M2/149‑2 (MQ=255)                             gCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGt                                                                                                                         >  2:275338‑M2/1‑147 (MQ=255)                                gTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGtggca                                                                                                                     >  3:102516‑M2/1‑144 (MQ=255)                                 tctgcgctgtCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCActggtgcgcttcaggttgcgtgtgccactggcac                                                                                                                    <  8:141567‑M1/146‑35 (MQ=255)                                   ggCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACg                                                                                                                   >  3:396466/1‑148 (MQ=255)                                       cTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGt                                                                                                              >  2:366898/1‑149 (MQ=255)                                        tGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTg                                                                                                             >  8:97821/1‑149 (MQ=255)                                          tCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCt                                                                                                           <  4:296009/149‑1 (MQ=255)                                            cACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCa                                                                                                                           <  6:182275/131‑1 (MQ=255)                                            cACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCa                                                                                                                           >  5:182275/1‑131 (MQ=255)                                            cACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTgg                                                                                                         >  5:315731/1‑149 (MQ=255)                                            cACGGGGCAGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTgg                                                                                                         >  7:143634/1‑149 (MQ=255)                                             aCGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGc                                                                                                        <  2:214848/149‑1 (MQ=255)                                                 ggCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCActggtgcgcttcaggttgcgtgtgccactggcactgttttg                                                                                                             <  6:300316‑M1/140‑42 (MQ=255)                                                 ggCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCActggtgcgcttcaggttgcgtgtgccactggcactgttttg                                                                                                             >  5:300316‑M1/1‑99 (MQ=255)                                                  gctgctCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTAc                                                                                                    >  6:22000/1‑148 (MQ=255)                                                    tgctCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGaa                                                                                                                                   <  4:260583/115‑1 (MQ=255)                                                    tgctCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGaa                                                                                                                                   >  3:260583/1‑115 (MQ=255)                                                      ctCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGtt                                                                                               <  6:315731/149‑1 (MQ=255)                                                      ctCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGtt                                                                                               >  4:316768/1‑149 (MQ=255)                                                      ctCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGtt                                                                                               >  8:382004/1‑149 (MQ=255)                                                         aGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGt                                                                                             <  2:102710/148‑1 (MQ=255)                                                            acaTCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCg                                                                                         <  4:204024/149‑1 (MQ=255)                                                             caTCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCgg                                                                                        >  7:209221/1‑149 (MQ=255)                                                                     ggtggtTCTACCTGGACGTTCCAGTGCACGCCTTGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGTAGCGCACCAGTGGCACGCAAGGGCTGGCCTACCAGTTGTACCGGGAcgccgc                                                                                <  6:348714/149‑1 (MQ=255)                                                                     ggtggtTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGAcgccgc                                                                                <  4:396466/149‑1 (MQ=255)                                                                     ggtggtTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGAcgccgc                                                                                <  5:10119/149‑1 (MQ=255)                                                                     ggtggtTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGAcgccgc                                                                                <  1:366898/149‑1 (MQ=255)                                                                           tCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAg                                                                          >  6:180674/1‑149 (MQ=255)                                                                                cGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGTACGCCGCCTATAGCCAgg                                                                     >  4:80290/1‑149 (MQ=255)                                                                                cGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAgg                                                                     <  5:22000/149‑1 (MQ=255)                                                                                  tGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCTGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGAcgcc                                                                                  <  8:316082/134‑1 (MQ=255)                                                                                  tGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCTGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGAcgcc                                                                                  >  7:316082/1‑134 (MQ=255)                                                                                  tGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGcc                                                                   >  5:247542/1‑149 (MQ=255)                                                                                     cGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTg                                                                <  4:293454/149‑1 (MQ=255)                                                                                     cGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTg                                                                <  3:316768/149‑1 (MQ=255)                                                                                      gTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTgg                                                               <  8:143634/149‑1 (MQ=255)                                                                                      gTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTgg                                                               <  5:180674/149‑1 (MQ=255)                                                                                      gTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCAACAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTgg                                                               >  7:213601/1‑149 (MQ=255)                                                                                                 cGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCa                                                                                                  >  8:134854/1‑103 (MQ=255)                                                                                                 cGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCa                                                                                                  <  7:134854/103‑1 (MQ=255)                                                                                                  gCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCg                                                         >  1:11176/1‑143 (MQ=255)                                                                                                  gCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCg                                                         <  2:11176/143‑1 (MQ=255)                                                                                                            gCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGt                                         <  8:209221/149‑1 (MQ=255)                                                                                                            gCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGt                                         >  4:161280/1‑149 (MQ=255)                                                                                                            gCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGt                                         <  7:97821/149‑1 (MQ=255)                                                                                                              catgagcatgagCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGa                                       <  8:213601/149‑1 (MQ=255)                                                                                                                     atgagcCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTc                                <  3:161280/149‑1 (MQ=255)                                                                                                                     atgagcCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTc                                >  7:238098/1‑149 (MQ=255)                                                                                                                       gagcCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGa                                       >  3:199665/1‑140 (MQ=255)                                                                                                                       gagcCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGa                                       <  4:199665/140‑1 (MQ=255)                                                                                                                         gcCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTccgac                            >  8:333012/1‑149 (MQ=255)                                                                                                                          ccTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAg                                      >  4:147022/1‑138 (MQ=255)                                                                                                                          ccTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTccgacc                           >  4:26767/1‑149 (MQ=255)                                                                                                                          ccTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTccgacc                           >  8:273420/1‑149 (MQ=255)                                                                                                                                 ggcggGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGc                                                 >  3:215772/1‑120 (MQ=255)                                                                                                                                 ggcggGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGc                                                 <  4:215772/120‑1 (MQ=255)                                                                                                                                   cggGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCAGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTCCGACCCGACGGCGa                  >  6:119351/1‑149 (MQ=255)                                                                                                                                       cAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGtggcactgttttgcccgccgtccaggctcatgctcatggccacgccaggcgtgcactggaacgtcacggtagaaccacccagcgatgtgctgagcagcc                       >  5:300316‑M2/1‑41 (MQ=255)                                                                                                                                       cAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGtggcactgttttgcccgccgtccaggctcatgctcatggccacgccaggcgtgcactggaacgtcacggtagaaccacccagcgatgtgctgagcagcc                       <  6:300316‑M2/140‑100 (MQ=255)                                                                                                                                       cAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTCCGACCCGACGGCGATc                >  1:118335/1‑147 (MQ=255)                                                                                                                                              gTGCCAGTGGCACACGCAACCTGAAGCGCACCAGtggcactgttttgcccgccgtccaggctcatgctcatggccacgccaggcgtgcactggaacgtcacggtagaaccacccagcgatgtgctgagcagccccgtggacagcgcaga       <  8:141567‑M2/149‑116 (MQ=255)                                                                                                                                              gTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTCCGACCCGACGGCGATCAAGCTACCg       <  7:273420/149‑1 (MQ=255)                                                                                                                                               tGCCActggtgcgcttcaggttgcgtgtgccactggcactgttttgcccgccgtccaggctcatgctcatggccacgccaggcgtgcactggaacgtcacggtagaaccacccagcgatgtgctgagcagccccgtggacagcgccgac      >  3:102516‑M1/1‑5 (MQ=255)                                                                                                                                               tGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTCCGACCCGACGGCGATCAAGCTACCgg      >  1:379558/1‑149 (MQ=255)                                                                                                                                                 ccAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAg                                                                          >  2:226788/1‑79 (MQ=255)                                                                                                                                                 ccAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTCCGACCCGACGGCGATCAAGCTACCGgtg    >  5:157173/1‑149 (MQ=255)                                                                                                                                                 ccAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCAACCAGTTGTACCGGGACGCCGCCTATAg                                                                          <  1:226788/79‑1 (MQ=255)                                                                                                                                                   actggtgcgcttcaggttgcgtgtgccactggcactgttttgcccgccgtccaggctcatgctcatggccacgccaggcgtgcactggaacgtcacggtagaaccacccagcgatgtgctgagcagccccgtggacagcgccgactgcg  <  4:102516‑M1/149‑149 (MQ=255)                                                                                                                                                   actggtgcgcttcaggttgcgtgtgccactggcactgttttgcccgccgtccaggctcatgctcatggccacgccaggcgtgcactggaacgtcacggtagaaccacccagcgatgtgctgagcagccccgtggacagcgccgactgc   >  2:275338‑M1/1‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CCAGCTACGGCACGCTCGATTATGGCTCGCAGTCGGCGCTGTCCACGGGGCTGCTCAGCACATCGCTGGGTGGTTCTACCGTGACGTTCCAGTGCACGCCTGGCGTGGCCATGAGCATGAGCCTGGACGGCGGGCAAAACAGTGCCAGTGGCACACGCAACCTGAAGCGCACCAGTGGCACGCAAGTGCTGGCCTACCAGTTGTACCGGGACGCCGCCTATAGCCAGGCCTTGGGGATCGGTCAGAGCGTGGCGGTGAGCTATTCCGACCCGACGGCGATCAAGCTACCGGTGTA  >  NC_002947/2692510‑2692804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.