New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2954524 =	41 (0.630)	4 (0.060)	4/254	NT	9.8%	intergenic (‑27/‑254)	PP_2586/PP_2587	putative amino acid transporter/LuxR family transcriptional regulator
	?	NC_002947	2954563 =	34 (0.540)					intergenic (‑66/‑215)	PP_2586/PP_2587	putative amino acid transporter/LuxR family transcriptional regulator

CAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTT  >  NC_002947/2954378‑2954668                                                                                                                                                    |                                                                                                                                                 caggccaAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGaca                                                                                                                                                >  3:275127/1‑149 (MQ=255)  cgctgcaggcaccggaatcaccctttggggtgagccgggcaagggctgtgtccgctcaccccaaagggtgattccgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaaca                                                                                                                                                >  5:418173‑M1/147‑149 (MQ=255)    gccaAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcg                                                                                                                                             >  6:401761/1‑149 (MQ=255)     ccaAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcgc                                                                                                                                            <  3:176610/149‑1 (MQ=255)        aaCAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGc                                                                                                                                         <  3:243752/149‑1 (MQ=255)                    gCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGc                                                                                                                             <  7:192408/149‑1 (MQ=255)                      gggcATGCTCATGGACTTGCGGACGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTc                                                                                                                           <  3:326976/146‑1 (MQ=255)                      ggTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTc                                                                                                                           <  8:136879/149‑1 (MQ=255)                        tCATGCTGATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTcgc                                                                                                                         <  4:340621/149‑1 (MQ=255)                            gCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGCGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGAcc                                                                                                                     >  4:30283/1‑149 (MQ=255)                                aTGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGa                                                                                                                                                  <  5:152581/116‑1 (MQ=255)                                aTGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGa                                                                                                                                                  >  6:152581/1‑116 (MQ=255)                                aTGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGt                                                                                                                   >  1:384923/1‑147 (MQ=255)                                   gACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGgt                                                                                                              >  5:385990/1‑149 (MQ=255)                                    ccgggcaagggctgtgtccgctcaccccaaagggtgattccgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttcctctcgacctccttgcacaACACCCCGCCAGGCGAGCAGGCTCGCCACCgtcacgt                                                                                                              <  4:119953‑M1/37‑4 (MQ=255)                                        gCGGAAGGGGCCGGGGTTGGTGCCGGGGTGGGTTGGGGCATGGGGGGGGGGGCTCATGGGTAGCCCCACTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgtt                                                                                                           <  1:335115/148‑1 (MQ=255)                                         cGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgttgt                                                                                                         <  8:176641/148‑1 (MQ=255)                                             aGCGGCCGGTGCTTGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAag                                                                                                    <  3:345621/149‑1 (MQ=255)                                              gCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGAcc                                                                                                                     >  7:329063/1‑131 (MQ=255)                                              gCGGCCGGTGCTGGTGACGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGAATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGAcc                                                                                                                     <  8:329063/131‑1 (MQ=255)                                                  tgtccgctcaccccaaagggtgattccgggtgcctgcagggtgtgggagcttcaacccggcccagcgctgcgagctttccgctcgacctccttgcacaACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAaggag                                                                                                 >  3:119953‑M1/99‑148 (MQ=255)                                                        cTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGc                                                                                          <  6:385990/148‑1 (MQ=255)                                                            tGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGaaa                                                                                     <  5:401761/149‑1 (MQ=255)                                                              ccGGGTTGCGAGGGTGGATGCGGGGCGGGGGT‑ATGGGCTGTACGTGTTGTTGTATTCATTGCTAACTCCTGAAAAGGGATTCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAg                                                                                    <  2:291113/148‑1 (MQ=255)                                                               caaagggtgattccgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgttgt                                                                                                         <  6:324817‑M1/42‑1 (MQ=255)                                                               caaagggtgattccgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgttgt                                                                                                         >  5:324817‑M1/86‑127 (MQ=255)                                                                     gCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAgc                                                                            >  3:148765/1‑149 (MQ=255)                                                                           gTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTggg                                                                      >  4:231865/1‑149 (MQ=255)                                                                                  cggggcggggCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGtt                                                               <  2:384923/149‑1 (MQ=255)                                                                                  cggggcggggCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGt                                                                <  2:215974/148‑1 (MQ=255)                                                                                        ggggcT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGCACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCt                                                         <  4:92403/149‑1 (MQ=255)                                                                                          ggcT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTcc                                                       <  4:148765/149‑1 (MQ=255)                                                                                             t‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCcac                                                    >  4:205198/1‑149 (MQ=255)                                                                                                tGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCcaca                                                   <  1:162831/148‑1 (MQ=255)                                                                                                   gCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCt                                               >  4:352234/1‑149 (MQ=255)                                                                                                    cTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCACTGGGGCGGGTTGATGCTCCCACACCCTg                                              >  4:195609/1‑149 (MQ=255)                                                                                                       tACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGc                                             <  3:352234/147‑1 (MQ=255)                                                                                                       tACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCa                                            <  3:231865/148‑1 (MQ=255)                                                                                                          ttgttgttgTATGCATTGCTAACTCCTGAAAAGGGATGCCGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCa                                        >  1:4742/1‑149 (MQ=255)                                                                                                               gttgtATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCg                                                                   >  1:136660/1‑117 (MQ=255)                                                                                                               gttgtATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCg                                                                   <  2:136660/117‑1 (MQ=255)                                                                                                                       cATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGc                                                                                          <  2:341410/86‑1 (MQ=255)                                                                                                                       cATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGc                                                                                          >  1:341410/1‑86 (MQ=255)                                                                                                                        aTTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGACGCTCCCACACCCTGCAGGCACCCGGAATCACCCt                          >  2:130159/1‑149 (MQ=255)                                                                                                                               aCTCCTGAAAAGGGATGCCGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTggg                     <  2:4742/147‑1 (MQ=255)                                                                                                                               aCTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCACTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTggg                     <  3:195609/147‑1 (MQ=255)                                                                                                                                              tGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCGCACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGccc    >  8:330649/1‑149 (MQ=255)                                                                                                                                              tGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCg                                    <  5:10776/117‑1 (MQ=255)                                                                                                                                              tGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCg                                    >  6:10776/1‑117 (MQ=255)                                                                                                                                                cAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCGCACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCtt  <  7:330649/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTT  >  NC_002947/2954378‑2954668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.