New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2954524 =	41 (0.630)	4 (0.060)	4/254	NT	9.8%	intergenic (‑27/‑254)	PP_2586/PP_2587	putative amino acid transporter/LuxR family transcriptional regulator
	?	NC_002947	2954563 =	34 (0.540)					intergenic (‑66/‑215)	PP_2586/PP_2587	putative amino acid transporter/LuxR family transcriptional regulator

GCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCG  >  NC_002947/2954417‑2954708                                                                                                                                                    |                                                                                                                                                  gCGGAAGGGGCCGGGGTTGGTGCCGGGGTGGGTTGGGGCATGGGGGGGGGGGCTCATGGGTAGCCCCACTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgtt                                                                                                                                                   <  1:335115/148‑1 (MQ=255)  cGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgttgt                                                                                                                                                 <  8:176641/148‑1 (MQ=255)      aGCGGCCGGTGCTTGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAag                                                                                                                                            <  3:345621/149‑1 (MQ=255)           tgtccgctcaccccaaagggtgattccgggtgcctgcagggtgtgggagcttcaacccggcccagcgctgcgagctttccgctcgacctccttgcacaACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAaggag                                                                                                                                         >  3:119953‑M1/99‑148 (MQ=255)                 cTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGc                                                                                                                                  <  6:385990/148‑1 (MQ=255)                     tGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGaaa                                                                                                                             <  5:401761/149‑1 (MQ=255)                       ccGGGTTGCGAGGGTGGATGCGGGGCGGGGGT‑ATGGGCTGTACGTGTTGTTGTATTCATTGCTAACTCCTGAAAAGGGATTCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAg                                                                                                                            <  2:291113/148‑1 (MQ=255)                        caaagggtgattccgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgttgt                                                                                                                                                 <  6:324817‑M1/42‑1 (MQ=255)                        caaagggtgattccgggtgcctgcagggtgtgggagcatcaacccgccccagcgctgcgagctttccgctcgacctccttgcacaACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGtgttgt                                                                                                                                                 >  5:324817‑M1/86‑127 (MQ=255)                              gCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAgc                                                                                                                    >  3:148765/1‑149 (MQ=255)                                    gTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTggg                                                                                                              >  4:231865/1‑149 (MQ=255)                                           cggggcggggCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGtt                                                                                                       <  2:384923/149‑1 (MQ=255)                                           cggggcggggCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGt                                                                                                        <  2:215974/148‑1 (MQ=255)                                                 ggggcT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGCACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCt                                                                                                 <  4:92403/149‑1 (MQ=255)                                                   ggcT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTcc                                                                                               <  4:148765/149‑1 (MQ=255)                                                      t‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCcac                                                                                            >  4:205198/1‑149 (MQ=255)                                                         tGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCcaca                                                                                           <  1:162831/148‑1 (MQ=255)                                                            gCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCt                                                                                       >  4:352234/1‑149 (MQ=255)                                                             cTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCACTGGGGCGGGTTGATGCTCCCACACCCTg                                                                                      >  4:195609/1‑149 (MQ=255)                                                                tACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGc                                                                                     <  3:352234/147‑1 (MQ=255)                                                                tACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCa                                                                                    <  3:231865/148‑1 (MQ=255)                                                                   ttgttgttgTATGCATTGCTAACTCCTGAAAAGGGATGCCGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCa                                                                                >  1:4742/1‑149 (MQ=255)                                                                        gttgtATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCg                                                                                                           >  1:136660/1‑117 (MQ=255)                                                                        gttgtATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCg                                                                                                           <  2:136660/117‑1 (MQ=255)                                                                                cATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGc                                                                                                                                  <  2:341410/86‑1 (MQ=255)                                                                                cATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGc                                                                                                                                  >  1:341410/1‑86 (MQ=255)                                                                                 aTTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGACGCTCCCACACCCTGCAGGCACCCGGAATCACCCt                                                                  >  2:130159/1‑149 (MQ=255)                                                                                        aCTCCTGAAAAGGGATGCCGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTggg                                                             <  2:4742/147‑1 (MQ=255)                                                                                        aCTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCACTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTggg                                                             <  3:195609/147‑1 (MQ=255)                                                                                                  ctccttgcacaacacctgacggtcgcgagcctgctcgcctgccgcggtgtTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGCCGGGTTGAAGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGaca                                                  >  3:119953‑M2/51‑148 (MQ=255)                                                                                                       tGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCGCACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGccc                                            >  8:330649/1‑149 (MQ=255)                                                                                                       tGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCg                                                                            <  5:10776/117‑1 (MQ=255)                                                                                                       tGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCg                                                                            >  6:10776/1‑117 (MQ=255)                                                                                                         cAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCGCACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCtt                                          <  7:330649/149‑1 (MQ=255)                                                                                                          acaacacctgacggtcgcgagcctgctcgcctgccgcggtgtTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTg                                                               >  5:324817‑M2/43‑127 (MQ=255)                                                                                                          acaacacctgacggtcgcgagcctgctcgcctgccgcggtgtTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTg                                                               <  6:324817‑M2/85‑1 (MQ=255)                                                                                                               acgtgacggtggcgagcctgctcgcctggcggggtgtTGTGCAAGGAGGTCGAGAGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCgg                                    <  4:119953‑M2/112‑1 (MQ=255)                                                                                                                            aGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCGCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCGGCTCACCCCAAAgg                       <  3:205198/149‑1 (MQ=255)                                                                                                                                   tCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCg                                                      <  7:2524/111‑1 (MQ=255)                                                                                                                                   tCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCg                                                      >  8:2524/1‑111 (MQ=255)                                                                                                                                   tCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCGGCGCACCCCAAAGGGTGATTc                >  6:69024/1‑149 (MQ=255)                                                                                                                                    cgcgACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTcc               <  5:69024/149‑1 (MQ=255)                                                                                                                                      cgACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGGGGGTTGACGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCgg             <  1:130159/149‑1 (MQ=255)                                                                                                                                                 tgtTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAgcg  >  5:418173‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCT‑ATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCGGACACAGCCCTTGCCCGGCTCACCCCAAAGGGTGATTCCGGTGCCTGCAGCG  >  NC_002947/2954417‑2954708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.