New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3253299 =	33 (0.510)	3 (0.050)	3/248	NT	7.4%	coding (143/729 nt)	PP_2851	hypothetical protein
	?	NC_002947	3253355 =	44 (0.720)					coding (87/729 nt)	PP_2851	hypothetical protein

TCGGCCAGAAAAGAGCAGCCGGGGCAGCCCTCGCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCGTGTGCTCATGG  >  NC_002947/3253152‑3253443                                                                                                                                                    |                                                                                                                                                 gtcgaatcgacctggtcgtactcgaccaaggtgtgaatcccccagcgagtagacagcaccatgagcacacgcgaaagcaggcacccggtggtttcccgcagccagtggctggcggctcgccagcaactgtggctgcacgaaaaagcgt                                                                                                                                                  >  5:170616‑M1/148‑148 (MQ=255) ggcgactcgacctggtcttactcgacctaggtgtgaatcccccagctaggagacagcaccatgagcacacgcgaaagcaggcacccggtggtttcccgcagccagtggctggcggctcgccagcaactgtggctgcactaaaaagcgt                                                                                                                                                  >  6:23308‑M1/148‑148 (MQ=255)  tcgaatcgacctggtcgtactcgaccaaggtgtgaatcacccagcgaggagacagcaccatgagcacacgcgaaagcaggcacccggtggtttcccgcagccagtggctggcggctcgccagcaactgtggctgcacgaaaaagcgtt                                                                                                                                                 <  8:63536‑M1/2‑1 (MQ=255)    gaatcgacctggtcgtactcgaccaaggtgtgaatcccccagcgaggagacagcaccatgagcacacgcgaaagcaggcacccggtggtttcccgcagccagtggctggcggctcgccagcaactgtggctgcacgaaaaagcgTTTAc                                                                                                                                              <  4:199738‑M1/5‑1 (MQ=255)    gCCAGAAAAGAGCAGCCGGGGCAGCCCTCGCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGCAGAAGCGGGAATCCTGCTCGACCGTTAc                                                                                                                                              >  3:299787/1‑149 (MQ=255)          aaaGAGCAGCCGGGGCAGCCCTCGCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAgg                                                                                                                                        <  7:166595/149‑1 (MQ=255)             gagCAGCCGGGGCAGCCCTCGCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAg                                                                                                                                     <  8:27989/149‑1 (MQ=255)                cagcCGGGGCAGCCCTCGCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGgc                                                                                                                                  >  2:10445/1‑149 (MQ=255)                            cccTCGCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTg                                                                                                                       >  3:64340/1‑148 (MQ=255)                                 gCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCa                                                                                                                                      >  1:270065/1‑128 (MQ=255)                                 gCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCa                                                                                                                                      <  2:270065/128‑1 (MQ=255)                                 gCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGt                                                                                                                   <  1:10445/147‑1 (MQ=255)                                                gAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCggtggt                                                                                                  <  4:64340/149‑1 (MQ=255)                                                                  cacacgcgaaagcaggcacccggtggtttcccgcagccagtggctggcggctcgccagcaactgtggctgcacgaaaaagcgTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGt                                                                                >  2:176312‑M1/83‑149 (MQ=255)                                                                     caACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTg                                                                               >  4:39948/1‑147 (MQ=255)                                                                      aaCTGGCTGCGGCCTGCGAACAGGACGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCATGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCGGCAGTTAGCGCGACCCGGGGTTGGGTAAACGATTTTTCCCGCAg                                                                            >  7:252004/1‑149 (MQ=255)                                                                       aCTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCatc                                                                           <  6:311698/149‑3 (MQ=255)                                                                         gaaagcaggcacccggtggtttcccgcagccagtggctggcggctcgccagcaactgtggctgcacgaaaaagcgTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACg                                                                                         <  7:184892‑M1/58‑1 (MQ=255)                                                                         gaaagcaggcacccggtggtttcccgcagccagtggctggcggctcgccagcaactgtggctgcacgaaaaagcgTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACg                                                                                         >  8:184892‑M1/76‑133 (MQ=255)                                                                               cGGCCTGCGAACAGGGCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGtt                                                                    <  4:349463/148‑1 (MQ=255)                                                                                         aCAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAgcc                                                         >  3:278478/1‑149 (MQ=255)                                                                                                ggCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCgccagcc                                                  >  7:137727/1‑149 (MQ=255)                                                                                                  ccAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCgccagcca                                                 >  8:331607/1‑148 (MQ=255)                                                                                                  ccAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCAc                                                <  6:406295/149‑1 (MQ=255)                                                                                                   cAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACt                                               >  2:185033/1‑149 (MQ=255)                                                                                                    aGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTg                                              >  3:395559/1‑149 (MQ=255)                                                                                                        tCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTg                                          >  5:40646/1‑149 (MQ=255)                                                                                                          aaCGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCg                                        >  6:81404/1‑149 (MQ=255)                                                                                                          aaCGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCg                                        >  5:112891/1‑149 (MQ=255)                                                                                                           aCGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCgg                                       <  7:331607/149‑1 (MQ=255)                                                                                                             gcgcCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCggg                                      >  1:183981/1‑148 (MQ=255)                                                                                                             gcgcCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGAGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTCGCGAGCCGCCAGCCACTGGCTGCggg                                      >  3:265842/1‑148 (MQ=255)                                                                                                               gcCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGaaa                                   >  7:283478/1‑149 (MQ=255)                                                                                                                  aTTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAacca                                >  4:255930/1‑149 (MQ=255)                                                                                                                                    gTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGTGGGAAACCACCGGGTGCCTGCTTTcgc              <  1:310790/149‑1 (MQ=255)                                                                                                                                    gTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTcgc              <  3:39948/149‑1 (MQ=255)                                                                                                                                      aaTCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCgt            >  3:134426/1‑149 (MQ=255)                                                                                                                                         ccTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCGtgtg         >  8:324908/1‑149 (MQ=255)                                                                                                                                          cTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGc                                                              <  7:6134/95‑1 (MQ=255)                                                                                                                                          cTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGc                                                              >  8:6134/1‑95 (MQ=255)                                                                                                                                           tGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCGTGTGc        >  1:242420/1‑148 (MQ=255)                                                                                                                                                gACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCGTGTGCTCAt    <  6:112891/147‑1 (MQ=255)                                                                                                                                                gACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCGTGTGCTCATgg  >  1:13163/1‑149 (MQ=255)                                                                                                                                                gACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCGTGTGCTCATg   <  8:137727/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 TCGGCCAGAAAAGAGCAGCCGGGGCAGCCCTCGCTCCAGCCTTCGGCGAACATGAAGTGGTAAAGCAGCAACTGGCTGCGGCCTGCGAACAGGTCGGCCAGACTCAACGCGCCATTTGGCCCGAAGAAGCGGTAATCCTGCTCGACCTTTACCCAAGGCAGGGCGCGACGGGCTGCAGTTAGCGCGTCGCGGTGGTGGGTAAACGCTTTTTCGTGCAGCCACAGTTGCTGGCGAGCCGCCAGCCACTGGCTGCGGGAAACCACCGGGTGCCTGCTTTCGCGTGTGCTCATGG  >  NC_002947/3253152‑3253443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.