New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3547910	40 (0.610)	4 (0.060)	3/252	NT	8.8%	coding (855/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	= 3547946	45 (0.720)					coding (891/1377 nt)	PP_3132	polysaccharide transporter

TGTTGTCGTCGATGGTCGGCGTGCTGGCGATGTACGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCG  >  NC_002947/3547765‑3548058                                                                                                                                                  |                                                                                                                                                     tgttgtCGTCGATGGTCGGCGTGCTGGCGATGTACGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGcgcg                                                                                                                                                   >  7:240855/1‑149 (MQ=255)      tcgtcgATGGTCGGCGTGCTGGCGATGTACGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGgc                                                                                                                                              >  5:348477/1‑149 (MQ=255)        gtcgATGGTCGGCGTGCTGGCGATGTACGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGgcgc                                                                                                                                            >  6:41778/1‑149 (MQ=255)           gATGGTCGGCGTGCTGGCGATGTACGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGctgc                                                                                                                                         <  3:361938/149‑1 (MQ=255)                      tGCTGGCGATGTACGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGc                                                                                                                              >  5:258683/1‑149 (MQ=255)                                   cGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGg                                                                                                                 >  6:105518‑M2/1‑148 (MQ=255)                                    ggCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCccgggccgcttcgctgaaagcaggcagcgcctccgcgc                                                                                                                <  2:109644‑M1/149‑39 (MQ=255)                                    ggCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCccgggccgcttcgctgaaagcaggcagcgccaccgcgc                                                                                                                <  4:156658‑M1/149‑39 (MQ=255)                                    ggCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgc                                                                                                                <  6:45443‑M2/149‑3 (MQ=255)                                          cGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCccgggccgcttcgctgaaagcaggcagcgccaccgcgcc                                                                                                               >  1:144676‑M1/1‑105 (MQ=255)                                          cGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCccgggccgcttcgctgaaagcaggcagcgccaccgcgcc                                                                                                               <  2:144676‑M1/144‑40 (MQ=255)                                            cATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCgacgac                                                                                                         >  4:102325/1‑148 (MQ=255)                                             atatGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGctgcct                                                                                                                                       >  5:245936/1‑117 (MQ=255)                                             atatGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGctgcct                                                                                                                                       <  6:245936/117‑1 (MQ=255)                                                  gTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCcgc                                                                                                  >  5:24450/1‑149 (MQ=255)                                                   tttGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCcgcg                                                                                                 >  6:60451/1‑149 (MQ=255)                                                          ccAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGaaa                                                                                          <  6:24450/149‑1 (MQ=255)                                                          ccAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCCGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGa                                                                                            >  2:328088/1‑147 (MQ=255)                                                           cAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAg                                                                                         >  1:105896/1‑149 (MQ=255)                                                               aTGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCt                                                                                     <  5:41778/149‑1 (MQ=255)                                                                 gTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTg                                                                                    >  1:46733/1‑148 (MQ=255)                                                                       ggcgCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTcc                                                                             >  7:55363/1‑149 (MQ=255)                                                                        gcgcAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCg                                                                            >  7:65309/1‑149 (MQ=255)                                                                                   tgtgtATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGgctgc                                                                 <  8:65309/149‑1 (MQ=255)                                                                                       tATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGt                                                             >  6:377536/1‑149 (MQ=255)                                                                                            gATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGgctg                                                                  >  1:401351/1‑139 (MQ=255)                                                                                            gATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGgctg                                                                  <  2:401351/139‑1 (MQ=255)                                                                                                 ccGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGa                                                          <  4:16317/142‑1 (MQ=255)                                                                                                 ccGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGa                                                          >  3:16317/1‑142 (MQ=255)                                                                                                  cGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTgg                                                  <  5:45443/149‑1 (MQ=255)                                                                                                    tGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCCGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTg                                                <  1:328088/149‑1 (MQ=255)                                                                                                         aTCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGtt                                           >  4:151182/1‑149 (MQ=255)                                                                                                         aTCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGtt                                           >  2:186549/1‑149 (MQ=255)                                                                                                              gggTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAttt                                      >  7:38379/1‑149 (MQ=255)                                                                                                              gggTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAttt                                      >  7:245610/1‑149 (MQ=255)                                                                                                              gggTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAttt                                      >  6:269271/1‑149 (MQ=255)                                                                                                               ggtgcggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAt                                        >  8:120000/1‑146 (MQ=255)                                                                                                               ggtgcggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAt                                        <  7:120000/146‑1 (MQ=255)                                                                                                                gtgcggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTtgt                                    <  5:174088/149‑1 (MQ=255)                                                                                                                   cggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGc                                 <  8:240855/149‑1 (MQ=255)                                                                                                                         aGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTc                           <  8:245610/149‑1 (MQ=255)                                                                                                                           aCCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCt                         <  8:38379/149‑1 (MQ=255)                                                                                                                                 cTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGc                   <  3:102325/149‑1 (MQ=255)                                                                                                                                    aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCttt                                                                        >  6:34514/1‑93 (MQ=255)                                                                                                                                    aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCttt                                                                        <  5:34514/93‑1 (MQ=255)                                                                                                                                    aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAg                >  2:2197/1‑149 (MQ=255)                                                                                                                                    aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAg                >  6:330322/1‑149 (MQ=255)                                                                                                                                                ggCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcg         <  2:144676‑M2/144‑106 (MQ=255)                                                                                                                                                ggCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcg         >  1:144676‑M2/1‑39 (MQ=255)                                                                                                                                                 gcgcGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcggtcgcc   <  4:156658‑M2/149‑112 (MQ=255)                                                                                                                                                 gcgcGGAGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcggtcgcc   <  2:109644‑M2/149‑112 (MQ=255)                                                                                                                                                 gCccgggccgcttcgctgaaagcaggcagcgccaccgcgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcggtcgcc   <  6:45443‑M1/149‑148 (MQ=255)                                                                                                                                                  cccgggccgcttcgctgaaagcaggcagcgccaccgcgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcggtcgccg  >  6:105518‑M1/1‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TGTTGTCGTCGATGGTCGGCGTGCTGGCGATGTACGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCG  >  NC_002947/3547765‑3548058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.