New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3547910	40 (0.610)	4 (0.060)	3/252	NT	8.8%	coding (855/1377 nt)	PP_3132	polysaccharide transporter
	?	NC_002947	= 3547946	45 (0.720)					coding (891/1377 nt)	PP_3132	polysaccharide transporter

CGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTATGACGATCGCTACCGCGAAG  >  NC_002947/3547799‑3548088                                                                                                                                                    |                                                                                                                                               cGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGg                                                                                                                                               >  6:105518‑M2/1‑148 (MQ=255)  ggCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgc                                                                                                                                              <  6:45443‑M2/149‑3 (MQ=255)          cATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCgacgac                                                                                                                                       >  4:102325/1‑148 (MQ=255)                gTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCcgc                                                                                                                                >  5:24450/1‑149 (MQ=255)                 tttGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCcgcg                                                                                                                               >  6:60451/1‑149 (MQ=255)                        ccAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGaaa                                                                                                                        <  6:24450/149‑1 (MQ=255)                        ccAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCCGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGa                                                                                                                          >  2:328088/1‑147 (MQ=255)                         cAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAg                                                                                                                       >  1:105896/1‑149 (MQ=255)                             aTGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCt                                                                                                                   <  5:41778/149‑1 (MQ=255)                               gTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTg                                                                                                                  >  1:46733/1‑148 (MQ=255)                                     ggcgCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTcc                                                                                                           >  7:55363/1‑149 (MQ=255)                                      gcgcAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCg                                                                                                          >  7:65309/1‑149 (MQ=255)                                                 tgtgtATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGgctgc                                                                                               <  8:65309/149‑1 (MQ=255)                                                     tATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGt                                                                                           >  6:377536/1‑149 (MQ=255)                                                          gATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGgctg                                                                                                >  1:401351/1‑139 (MQ=255)                                                          gATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGgctg                                                                                                <  2:401351/139‑1 (MQ=255)                                                               ccGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGa                                                                                        >  3:16317/1‑142 (MQ=255)                                                               ccGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGa                                                                                        <  4:16317/142‑1 (MQ=255)                                                                cGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTgg                                                                                <  5:45443/149‑1 (MQ=255)                                                                  tGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCCGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTg                                                                              <  1:328088/149‑1 (MQ=255)                                                                       aTCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGtt                                                                         >  4:151182/1‑149 (MQ=255)                                                                       aTCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGtt                                                                         >  2:186549/1‑149 (MQ=255)                                                                            gggTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAttt                                                                    >  7:245610/1‑149 (MQ=255)                                                                            gggTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAttt                                                                    >  6:269271/1‑149 (MQ=255)                                                                            gggTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAttt                                                                    >  7:38379/1‑149 (MQ=255)                                                                             ggtgcggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAt                                                                      <  7:120000/146‑1 (MQ=255)                                                                             ggtgcggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCAt                                                                      >  8:120000/1‑146 (MQ=255)                                                                              gtgcggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTtgt                                                                  <  5:174088/149‑1 (MQ=255)                                                                                 cggtgcAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGc                                                               <  8:240855/149‑1 (MQ=255)                                                                                       aGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTc                                                         <  8:245610/149‑1 (MQ=255)                                                                                         aCCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCt                                                       <  8:38379/149‑1 (MQ=255)                                                                                               cTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGc                                                 <  3:102325/149‑1 (MQ=255)                                                                                                  aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCttt                                                                                                      >  6:34514/1‑93 (MQ=255)                                                                                                  aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCttt                                                                                                      <  5:34514/93‑1 (MQ=255)                                                                                                  aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAg                                              >  6:330322/1‑149 (MQ=255)                                                                                                  aTGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAg                                              >  2:2197/1‑149 (MQ=255)                                                                                                              ggCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcg                                       >  1:144676‑M2/1‑39 (MQ=255)                                                                                                              ggCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcg                                       <  2:144676‑M2/144‑106 (MQ=255)                                                                                                               gcgcGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcggtcgcc                                 <  4:156658‑M2/149‑112 (MQ=255)                                                                                                               gcgcGGAGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGgccgacaattttcatgagcgcggtctgcaccgcacccaggatcagcacggcgatcgaatacacacccagttgcgccgccgacatgctggcgccaaaccatatgcggtcgcc                                 <  2:109644‑M2/149‑112 (MQ=255)                                                                                                                 gcgGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCg                                                                                                          >  2:217599/1‑74 (MQ=255)                                                                                                                   ggTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCt                             <  5:330322/149‑1 (MQ=255)                                                                                                                    gTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTg                            <  1:2197/149‑1 (MQ=255)                                                                                                                       gcgcTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGAt                         <  1:186549/149‑1 (MQ=255)                                                                                                                         gcTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCgct                                        <  5:226567/132‑1 (MQ=255)                                                                                                                         gcTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCgct                                        >  6:226567/1‑132 (MQ=255)                                                                                                                          ctgcctgcTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTa                      <  6:348477/149‑1 (MQ=255)                                                                                                                              ctgcTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTATGAc                  >  5:50830/1‑149 (MQ=255)                                                                                                                                     cAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTATGACGATCGc            <  5:60451/148‑1 (MQ=255)                                                                                                                                     cAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTATGACGATCGc            <  2:105896/148‑1 (MQ=255)                                                                                                                                           aGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTATGACGATCGCTACcgc      >  5:22226/1‑148 (MQ=255)                                                                                                                                              ggCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTATGACGATCGCTACCGCGAAg  <  5:7460/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                               CGGCGACCGCATATGGTTTGGCGCCAGCATGTCGGCGGCGCAACTGGGTGTGTATTCGATCGCCGTGCTGATCCTGGGTGCGGTGCAGACCGCGCTCATGAAAATTGTCGGCGCGGTGGCGCTGCCTGCTTTCAGCGAAGCGGCCCGGGCCGACGACAAGCCGCGCCTGAAAGCGCTGTATTTCCGCTTTCGGCTGCTGGTCGACCTGCTGGTGCTGTTCATTTGTGGCGGTTTCCTGACCGCCAGCCCGCTGCTGATCGGCTGGATGTATGACGATCGCTACCGCGAAG  >  NC_002947/3547799‑3548088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.