New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4037012	70 (1.080)	4 (0.070)	4/246	NT	5.4%	coding (2063/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4037047	74 (1.220)					coding (2098/2145 nt)	PP_3557	methyl‑accepting chemotaxis transducer

ATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGCCCCACT  >  NC_002947/4036873‑4037159                                                                                                                                              |                                                                                                                                                    aTTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTc                                                                                                                                            >  4:43723/1‑149 (MQ=255)         ggCGGAGACGGTGATCACCGACATGAACCTGCAGTGCGCCTCTGCCGCCGAGGAGCACAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCggg                                                                                                                                    <  6:258873/149‑1 (MQ=255)                     gaTCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGACTGGCCAGGCCACCGAGTCGGCGCGGGTCAGCCAGTCGc                                                                                                                        >  3:5530/1‑149 (MQ=255)                       tCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCtgttcagcgactggctgacccgcgccgactc                                                                                                                      >  3:210801‑M1/1‑118 (MQ=255)                       tCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCt                                                                                                                       <  3:43723/148‑1 (MQ=255)                        cACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTg                                                                                                                      >  2:18813/1‑148 (MQ=255)                         aCCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGaa                                                                                                                    >  4:368142/1‑149 (MQ=255)                           cGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTAGGCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGaa                                                                                                                    >  1:304510/1‑148 (MQ=255)                             aCATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAgc                                                                                                                <  6:90559‑M2/149‑3 (MQ=255)                                 gAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAAc                                                                                                                   <  1:162438/142‑1 (MQ=255)                                   aCCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCtgttcagcgactggctgacccgcgccgactcgttggcctggcc                                                                                                          <  8:2563‑M1/149‑44 (MQ=255)                                   aCCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCtgttcagcgactggctgacccgcgccgactcgttggcctggc                                                                                                           <  4:401920‑M1/148‑43 (MQ=255)                                   aCCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAgcctggcc                                                                                                          >  6:109462‑M2/1‑141 (MQ=255)                                    actGCATATCGCATCTGCCGCCGAGGAGCAAAGCGAGGTA‑GCCGATGAAATCAACATAAACGTGGCTAACATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCATTCtgttcagcgacttgctgaccctcgccgactcgttgtcctggcca                                                                                                         <  4:210801‑M1/148‑45 (MQ=255)                                     cTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAgc                                                                                                                >  5:215974‑M2/1‑139 (MQ=255)                                     cTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAgc                                                                                                                <  6:215974‑M2/141‑3 (MQ=255)                                     cTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCaa                                                                                                        >  5:335305/1‑149 (MQ=255)                                       gCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAAc                                                                                                       >  1:79984/1‑148 (MQ=255)                                          gATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACcagc                                                                                                   <  5:94785/149‑1 (MQ=255)                                          gATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACcag                                                                                                    >  1:17055/1‑148 (MQ=255)                                              gCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGACTCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCagcagc                                                                                                >  6:119468/1‑148 (MQ=255)                                                ctctGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACcagcag                                                                                                 <  6:170997/145‑1 (MQ=255)                                                ctctGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACcagcag                                                                                                 >  5:170997/1‑145 (MQ=255)                                                ctctGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAg                                                                                             >  7:206787/1‑149 (MQ=255)                                                       gccgAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGAt                                                                                      >  4:277678/1‑149 (MQ=255)                                                        ccgCGGAGCAAAGCGCGGGA‑GCCGAGGAAATCAACCGCACCGTGGCGACCATTCGTGAT‑GTCACGGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCTGCAAGCGCTGATg                                                                                     <  4:5530/149‑1 (MQ=255)                                                                cAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGATGGGCACTGAATCCCTGTCTGGCCAGGCCAACGAGACGCCCCGGGTCAGCCAGTCGATGAACACCATGGCCAACCAGCAGCAAGCGCTGATGGACCAGt                                                                              >  1:100438/1‑149 (MQ=255)                                                                cAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAg                                                                               >  2:214230/1‑147 (MQ=255)                                                                cAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAg                                                                               <  1:214230/147‑1 (MQ=255)                                                                cAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGtt                                                                             >  7:295332/1‑149 (MQ=255)                                                                 aaaGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTc                                                                            <  7:26200/149‑1 (MQ=255)                                                                      gcgGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGt                                                                       <  1:405297/149‑1 (MQ=255)                                                                       cgGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTc                                                                      >  8:351742/1‑149 (MQ=255)                                                                        ggTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCt                                                                     <  5:90559/149‑1 (MQ=255)                                                                             gCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGaa                                                                  <  3:277678/148‑1 (MQ=255)                                                                                   gAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTACGCGTCTGAAGCGAACg                                                           >  5:234182/1‑149 (MQ=255)                                                                                     aaTCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACggg                                                         <  3:368142/149‑1 (MQ=255)                                                                                     aaTCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACggg                                                         <  2:17055/149‑1 (MQ=255)                                                                                      aTCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGa                                                                                                                     >  6:349117/1‑88 (MQ=255)                                                                                      aTCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGa                                                                                                                     <  5:349117/88‑1 (MQ=255)                                                                                        cAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACTAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGc                                                       >  5:203818/1‑148 (MQ=255)                                                                                        cAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGcc                                                      >  5:309319/1‑149 (MQ=255)                                                                                          aCAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGCCCAGTTCCGCGTGTGAAGCGAACGGGGCCAc                                                    >  7:255373/1‑149 (MQ=255)                                                                                          aCAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGaa                                                                  >  6:62060/1‑135 (MQ=255)                                                                                          aCAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGaa                                                                  <  5:62060/135‑1 (MQ=255)                                                                                          aCAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCAc                                                    <  8:206787/149‑1 (MQ=255)                                                                                            aGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGc                                                  >  7:41991/1‑149 (MQ=255)                                                                                            aGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGc                                                  <  2:304510/149‑1 (MQ=255)                                                                                              cAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACgggg                                                        <  7:277063/141‑1 (MQ=255)                                                                                              cAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACgggg                                                        >  8:277063/1‑141 (MQ=255)                                                                                                aCGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGt                                              <  7:351742/149‑1 (MQ=255)                                                                                                     gCGAGCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCTAGCGCTGATGGACCAGTTCCTCGTCTGAAGCGAACGGGGCCACGCCAGTGGcc                                          <  2:71484/148‑1 (MQ=255)                                                                                                          cATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCACTACCGCGTCTGAAGCGAACGGGGCCACGCCAGTGCACCTGaaa                                    >  4:17251/1‑149 (MQ=255)                                                                                                            ttCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACt                                  <  3:16999/149‑1 (MQ=255)                                                                                                               gTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGa                                >  4:188953/1‑148 (MQ=255)                                                                                                               gTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGa                                >  5:84303/1‑148 (MQ=255)                                                                                                               gTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGAc                               <  3:188953/149‑1 (MQ=255)                                                                                                                     gTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAAc                          >  6:308211/1‑149 (MQ=255)                                                                                                                     gTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAAc                          >  2:276284/1‑149 (MQ=255)                                                                                                                      tCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGccc                                         >  6:249402/1‑133 (MQ=255)                                                                                                                      tCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGccc                                         <  5:249402/133‑1 (MQ=255)                                                                                                                        aCTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCGAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCtc                       >  1:286986/1‑149 (MQ=255)                                                                                                                        aCTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAAc                                   >  8:164516/1‑137 (MQ=255)                                                                                                                        aCTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAAc                                   <  7:164516/137‑1 (MQ=255)                                                                                                                        aCTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCtc                       >  1:200096/1‑149 (MQ=255)                                                                                                                              tCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCgtcgtc                 <  5:119468/149‑1 (MQ=255)                                                                                                                                ccTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTa               >  3:133132/1‑149 (MQ=255)                                                                                                                                 cTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCt                                        >  8:361166/1‑123 (MQ=255)                                                                                                                                 cTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTa               >  5:347504/1‑148 (MQ=255)                                                                                                                                  tGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTaca             >  7:27023/1‑149 (MQ=255)                                                                                                                                   gTCTGCCCAGGCCACCGCTGCGGCGCGGGTCACCCAGTCGCTGAACCCCCTGGCCAACAAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTacac            <  8:255373/149‑1 (MQ=255)                                                                                                                                    tCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTaca             <  1:276284/147‑1 (MQ=255)                                                                                                                                      tGGCCAGGACAACGAGTCGGCGAGGGTCAGCAAGTCGCTGAACAgaatggccagacagggattcagtgacatcacgaatgttagccacgtttatgttgatttcatcggctacctcgctttgctcctcggcggcagatgcgatatgcagt         <  4:210801‑M2/149‑106 (MQ=255)                                                                                                                                       ggccaggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAgcctggccagacagggattcagtgacatcacgaatggtcgccacgttgctgttgatttcctcggctaccgcgctttgctcctcggcggcagaggcgatctgcaggt        <  8:2563‑M2/149‑107 (MQ=255)                                                                                                                                       ggCCAGGCtgttcagcgactggctgacccgcgccgactcgttggcctggccagacagggattcagtgacatcacgaatggtcgccacgttgctgttgatttcctcggctaccgcgctttgctcctcggcggcagaggcgatctgcaggt        >  6:109462‑M1/1‑8 (MQ=255)                                                                                                                                        gccaggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAgcctggccagacagggattcagtgacatcacgaatggtcgccacgttgctgttgatttcctcggctaccgcgctttgctcctcggcggcagaggcgatctgcaggt        <  4:401920‑M2/148‑107 (MQ=255)                                                                                                                                        gccaggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGcc       <  2:286986/149‑1 (MQ=255)                                                                                                                                        gccaggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGcc       >  4:97650/1‑149 (MQ=255)                                                                                                                                        gccaggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGcc       >  3:163399/1‑149 (MQ=255)                                                                                                                                         ccagtcaaAGGAGTCGGCGCGGGTCAGCCATTCGCTGAACAGCCTGGCCAACCAGAAGCAAGCTCTGATGGACCAGTTCCGCGTCTGAAGCTAACGGTGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGccc      <  3:17251/149‑1 (MQ=255)                                                                                                                                         ccaggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGccc      >  3:400242/1‑149 (MQ=255)                                                                                                                                         ccaggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGccc      <  8:27023/149‑1 (MQ=255)                                                                                                                                           aggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGCCCCa    >  1:73555/1‑149 (MQ=255)                                                                                                                                            ggccaACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGCCCCAc   <  2:200096/149‑1 (MQ=255)                                                                                                                                             gCtgttcagcgactggctgacccgcgccgactcgttggcctggccagacagggattcagtgacatcacgaatggtcgccacgttgctgttgatttcctcggctaccgcgctttgctcctcggcggcagaggcgatctgcaggttcatgt  <  6:90559‑M1/149‑148 (MQ=255)                                                                                                                                             gCtgttcagcgactggctgacccgcgccgactcgttggcctggccagacagggattcagtgacatcacgaatggtcgccacgttgctgttgatttcctcggctaccgcgctttgctcctcggcggcagaggcgatctgcag          <  6:215974‑M1/141‑140 (MQ=255)                                                                                                                                             gCtgttcagcgactggctgacccgcgccgactcgttggcctggccagacagggattcagtgacatcacgaatggtcgccacgttgctgttgatttcctcggctaccgcgctttgctcctcggcggcagaggcgatctgcag          >  5:215974‑M1/1‑2 (MQ=255)                                                                                                                                              |                                                                                                                                                    ATTGGCCAGGCGGTGACGGTGATCACCGACATGAACCTGCAGATCGCCTCTGCCGCCGAGGAGCAAAGCGCGGTA‑GCCGAGGAAATCAACAGCAACGTGGCGACCATTCGTGAT‑GTCACTGAATCCCTGTCTGGCCAGGCCAACGAGTCGGCGCGGGTCAGCCAGTCGCTGAACAGCCTGGCCAACCAGCAGCAAGCGCTGATGGACCAGTTCCGCGTCTGAAGCGAACGGGGCCACGCCAGTGGCCCTGAAACTGACAAAACCTCGTCGTCTACACTTGCCCCACT  >  NC_002947/4036873‑4037159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.