New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4601389 =	53 (0.810)	4 (0.060)	4/250	NT	8.1%	coding (503/633 nt)	PP_4073	hypothetical protein
	?	NC_002947	4601426 =	41 (0.670)					coding (466/633 nt)	PP_4073	hypothetical protein

GCGCCTCGACATCAGCTACCAGCGACATGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTT  >  NC_002947/4601244‑4601533                                                                                                                                                  |                                                                                                                                                 ctgatcatcagctgcgtgcagaacatctcgaggttgcaactggtcaccgcccaacccgtcgatgccagccgagtgcaggtgcggttgagaggggagcggggcgctactgtacccacaccgtggcaagtgatggaaaacggccaagTGCt                                                                                                                                               <  4:192920‑M1/4‑1 (MQ=255)    ccTCGACATCAGCTACCAGCGACATGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGa                                                                                                                                            >  8:200149/1‑149 (MQ=255)    atcatcagctgcgtgcagaacatctcgaggttgcaactggtcaccgcccaacccgtcgatgccagccgagtgcaggtgcggttgagaggggagcggggcgctactgtacccacaccgtggcaagtgatggaaaacggccaagTGCTc                                                                                                                                              >  6:402930‑M1/143‑147 (MQ=255)    atcatcagctgcgtgcagaacatctcgaggttgcaactggtcaccgcccaacccgtcgatgccagccgagtgcaggtgcggttgagaggggagcggggcgctactgtacccacaccgtggcaagtgatggaaaacggccaagTGCTc                                                                                                                                              >  5:360286‑M1/143‑147 (MQ=255)         aCATCAGCTACCAGCGACATGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATAccc                                                                                                                                       <  5:245763/149‑1 (MQ=255)          cATCAGCTACCAGCGACATGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCg                                                                                                                                      >  5:5529/1‑149 (MQ=255)           aTCAGCTACCAGCGACATGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCgg                                                                                                                                     <  2:252087/149‑1 (MQ=255)                    cAGCGACATGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCctct                                                                                                                            <  2:235353/149‑1 (MQ=255)                            tGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGt                                                                                                                    <  2:406879/149‑1 (MQ=255)                             gTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTc                                                                                                                   >  1:131768/1‑149 (MQ=255)                              tCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACCGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTc                                                                                                                   >  8:54884/1‑148 (MQ=255)                               cTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTc                                                                                                                   >  1:341665/1‑147 (MQ=255)                               cTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCg                                                                                                                  <  6:5529/148‑1 (MQ=255)                                ttGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAg                                                                                                                >  3:212529/1‑149 (MQ=255)                                      aactggtcaccgcccaacccgtcgatgccagccgagtgcaggtgcggttgagaggggagcggggcgctactgtacccacaccgtggcaagtgatggaaaacggccaagTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTg                                                                                                          >  6:113529‑M1/109‑149 (MQ=255)                                       ccTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGACGAGCACATgg                                                                                                         >  3:382041/1‑149 (MQ=255)                                        ctggtcaccgcccaacccgtcgatgccagccgagtgcaggtgcggttgagaggggagcggggcgctactgtacccacaccgtggcaagtgatggaaaacggccaagTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGc                                                                                                        >  8:201561‑M1/107‑149 (MQ=255)                                         tcgtcgATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCTATACCCGGCAGGCCTCTGCCGGCGGCGAGCACTTGGcc                                                                                                       >  7:331841/1‑149 (MQ=255)                                          cgtcgATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCgg                                                                                                                       >  6:385752/1‑132 (MQ=255)                                          cgtcgATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCgg                                                                                                                       <  5:385752/132‑1 (MQ=255)                                               aTAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTc                                                                                                 <  6:161795/149‑1 (MQ=255)                                                   gCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCa                                                                                                                                   >  8:319063/1‑111 (MQ=255)                                                   gCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCa                                                                                                                                   <  7:319063/111‑1 (MQ=255)                                                   gCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATc                                                                                             >  6:238188/1‑149 (MQ=255)                                                             ccccTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACg                                                                                   <  7:54884/149‑1 (MQ=255)                                                               ccTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACtt                                                                                         >  3:304251/1‑141 (MQ=255)                                                               ccTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACtt                                                                                         <  4:304251/141‑1 (MQ=255)                                                                gccagccgagtgcaggtgcggttgagaggggagcggggcgctactgtacccacaccgtggcaagtgatggaaaacggccaagTGCTCGATACCCGGCAGGCCTCTGCCGGCGTc                                                                                                                   <  8:312831‑M1/32‑1 (MQ=255)                                                                gccagccgagtgcaggtgcggttgagaggggagcggggcgctactgtacccacaccgtggcaagtgatggaaaacggccaagTGCTCGATACCCGGCAGGCCTCTGCCGGCGTc                                                                                                                   >  7:312831‑M1/83‑114 (MQ=255)                                                                cTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGTCACGgtg                                                                                >  2:387663/1‑149 (MQ=255)                                                                  gAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGtgtg                                                                              >  6:158754/1‑149 (MQ=255)                                                                   aggttCATAATCGAGTCCTTCAACGGCAGGGTTGTCGCTCTCTACTTGAATGTGATGGGCCCGGTTAAATTGCTTGATCTGGTCGATAGCGGGCAGGCCTATTCCGTCGTCGAGCACTTGGCCGTTTTCCATGACTTGCGACGGtgtg                                                                              <  4:382041/144‑1 (MQ=255)                                                                   aGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTgg                                                                             <  5:238188/149‑1 (MQ=255)                                                                      gTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTa                                                                          <  7:200149/149‑1 (MQ=255)                                                                             aCGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGa                                                                                                                 <  3:52970/103‑1 (MQ=255)                                                                             aCGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGa                                                                                                                 >  4:52970/1‑103 (MQ=255)                                                                             aCGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAgc                                                                   <  2:341665/149‑1 (MQ=255)                                                                                     aTCAACGGCAGGGTTGTCCCTCTCTACGTGAATCCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCt                                                           >  6:206895/1‑149 (MQ=255)                                                                                      tCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGtttt                                                                                                  >  6:126139/1‑109 (MQ=255)                                                                                      tCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGtttt                                                                                                  <  5:126139/109‑1 (MQ=255)                                                                                                    gTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCa                                            >  4:100409/1‑149 (MQ=255)                                                                                                            ctACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGcc                                                                                      <  7:90529/99‑1 (MQ=255)                                                                                                            ctACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGcc                                                                                      >  8:90529/1‑99 (MQ=255)                                                                                                               cGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCgg                                 >  1:248741/1‑149 (MQ=255)                                                                                                                         aTGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGa                       <  5:356402/149‑1 (MQ=255)                                                                                                                          tGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATAACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGAc                      >  5:262433/1‑149 (MQ=255)                                                                                                                           gggCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACg                     >  8:78022/1‑149 (MQ=255)                                                                                                                            ggCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCACGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACgg                    <  8:331841/149‑1 (MQ=255)                                                                                                                                ccGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTg                >  7:45672/1‑149 (MQ=255)                                                                                                                                 cGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTgg               <  4:212529/149‑1 (MQ=255)                                                                                                                                  gATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTc                                                          >  6:108066/1‑105 (MQ=255)                                                                                                                                  gATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTggg              <  3:100409/149‑1 (MQ=255)                                                                                                                                  gATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTggg              <  2:248741/149‑1 (MQ=255)                                                                                                                                  gATCAATTGCTTGATCTGCTCCATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTc                                                          <  5:108066/105‑1 (MQ=255)                                                                                                                                       aTTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGt          >  7:153503/1‑148 (MQ=255)                                                                                                                                       aTTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGt          >  3:192920/1‑148 (MQ=255)                                                                                                                                       aTTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGt          >  1:296453/1‑148 (MQ=255)                                                                                                                                       aTTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTg         >  7:348574/1‑149 (MQ=255)                                                                                                                                           cTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGAc       >  1:148142/1‑147 (MQ=255)                                                                                                                                           cTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGAc       >  7:23935/1‑147 (MQ=255)                                                                                                                                               aTCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGtt  <  6:262433/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GCGCCTCGACATCAGCTACCAGCGACATGTCTTGCGAGCCTCGTCGATAAGCGGGTCCAGCCCCTGAGCGTCAAAAACGAGTCCATCAACGGCAGGGTTGTCGCTCTCTACGTGAATGCGATGGGCCCCGATCAATTGCTTGATCTGCTCGATACCCGGCAGGCCTCTGCCGGCGTCGAGCACTTGGCCGTTTTCCATCACTTGCCACGGTGTGGGTACAGTAGCGCCCCGCTCCCCTCTCAACCGCACCTGCACTCGGCTGGCATCGACGGGTTGGGCGGTGACCAGTT  >  NC_002947/4601244‑4601533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.