New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5152855	0 (0.000)	3 (0.050)	3/248	NT	100%	intergenic (‑932/+482)	PP_5696/PP_4537	hypothetical protein/membrane protein
	?	NC_002947	= 5152920	NA (NA)					intergenic (‑997/+417)	PP_5696/PP_4537	hypothetical protein/membrane protein

TCGTTTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGCCAGGTGCAGCTACTGAGTGACTACCTGGCGGGCAAGCGCCAGGAACTGCAAAACTGGAACGAGGCGCTGGGGCCGGTGGCGGACCTGTCGGCCAACCGCCGCAAGCTGACCAACATCGGCACCTTCCGCGCGTTTGCCCTGG  >  NC_002947/5152708‑5153001                                                                                                                                                    |                                                                                                                                                   tCGTTTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCT                                                                                                                                                    >  7:215502‑M1/1‑148 (MQ=255)   gTTTCCATCCCCACCTGGCGACTGATGAGCGAGTCATTGCGCAATTACATCGGCATGCAGCAGTCCTGTTGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGa                                                                                                                                                  <  7:239334/148‑1 (MQ=11)                                                             agcagTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctg                                                                                       >  3:223432‑M1/1‑88 (MQ=255)                                                                               gcATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTTCGCTTCCTCACCCGCGAAGAAGATCAGCGCCTcgttccagttttgcagttcctggagcttgcccgccaggtagtcactcagtagctgcacgtggctcaggcggtgttcttc                                                                     <  4:106472‑M1/149‑80 (MQ=255)                                                                                  tCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttc                                                                  <  4:223432‑M1/149‑83 (MQ=255)                                                                                                                                               gcgcCTcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacagcctgcgctagatgcgccggcca     >  2:197617‑M1/1‑6 (MQ=255)                                                                                                                                                 gcCTcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttcttcgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggctgcgcttgatgcgccggccacc   <  7:9669‑M1/149‑146 (MQ=255)                                                                                                                                                   cTcgttccagttttgcagttcctggcgcttgcccgccaggtagtcactcagtagctgcacctggctcaggcgctgttcttctacgcgggtgaggaagcgcacgccggcggcgtcgatgaacaggctgcgcttgatgcgccggccaccg  >  7:8553‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCGTTTCCATCCCCACCTGGCGCCTGATGAGCGAGTCATTCCGCAATTACCGCGGCATGCAGCAGTCCGGTGGCCGGCGCATCAAGCGCAGCCTGTTCATCGACGCCGCCGGCGTGCGCTTCCTCACCCGCGAAGAAGAACAGCGCCTGAGCCAGGTGCAGCTACTGAGTGACTACCTGGCGGGCAAGCGCCAGGAACTGCAAAACTGGAACGAGGCGCTGGGGCCGGTGGCGGACCTGTCGGCCAACCGCCGCAAGCTGACCAACATCGGCACCTTCCGCGCGTTTGCCCTGG  >  NC_002947/5152708‑5153001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.