New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5850864	44 (0.680)	4 (0.070)	4/248	NT	7.6%	coding (1569/1842 nt)	ilvD	dihydroxy‑acid dehydratase
	?	NC_002947	= 5850932	56 (0.920)					coding (1637/1842 nt)	ilvD	dihydroxy‑acid dehydratase

ATCATCCGCTACGAAGGCCCGAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGAGCAGGACA  >  NC_002947/5850718‑5851009                                                                                                                                                   |                                                                                                                                                  atcatcCGCTACGAAGGCCCGAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCgg                                                                                                                                                 >  8:49466/1‑149 (MQ=255)       cGCTACGAAGGCCCGAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACg                                                                                                                                            <  6:165983/148‑1 (MQ=255)            cGAAGGCCCGAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGc                                                                                                                                      >  7:373685/1‑149 (MQ=255)             gAAGGCCCGAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGcc                                                                                                                                     <  7:49466/149‑1 (MQ=255)                    cGAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCa                                                                                                                                    <  1:138202/143‑1 (MQ=255)                    agAAAGGCGGCCCCGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTACAAAGGCCTTGGCAAGGCCTGCGCCCTGATCACCGACGCTCGCTTCTCGTGCGGTACCTCGGGCCTCTCGATCGGCCACGCCTCGCCagataac                                                                                                                              >  2:138202/2‑145 (MQ=255)                     gAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGTGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCCGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCcg                                                                                                                             >  6:22464/1‑149 (MQ=255)                           cggcCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGcggcgg                                                                                                                       <  2:344921/149‑1 (MQ=255)                             gcCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACg                                                                                                                                            <  3:291240/126‑1 (MQ=255)                             gcCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACg                                                                                                                                            >  4:291240/1‑126 (MQ=255)                                        cAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCagtaccttgtcgccgtcgcgcaccaggccgatggcgccgcc                                                                                                          >  8:116794‑M1/1‑108 (MQ=255)                                         aaGAAATGCTCTACCCGACCTCGTACCTCAAGTCGAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGc                                                                                                         >  4:239616/1‑149 (MQ=255)                                                     aCCAGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCTGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCTCCAGAGGCCGCGGAGGGCGGCGCCATCGGCCTGGTGCGCGAc                                                                                             >  4:33073/1‑149 (MQ=255)                                                      cccGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACg                                                                                            <  1:222883/149‑1 (MQ=255)                                                      cccGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACg                                                                                            <  8:373685/149‑1 (MQ=255)                                                       ccGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACgg                                                                                           >  3:42290/1‑149 (MQ=255)                                                       ccGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACgg                                                                                           >  1:358963/1‑149 (MQ=255)                                                               gTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACaa                                                                                     <  4:42290/147‑1 (MQ=255)                                                                  ccTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTa                                                                                 <  1:367237/148‑1 (MQ=255)                                                                    tCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACt                                                                               >  5:341429/1‑148 (MQ=255)                                                                       aGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTgatc                                                                           >  8:191220‑M2/1‑145 (MQ=255)                                                                         tCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCagtaccttgtcgccgtcgcgcaccaggccgatggcgccgcccgccgcggcctctggcgaggcgtggccgatcga                                                                         <  7:116794‑M1/149‑75 (MQ=255)                                                                            aaaGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCTGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACAt                                                                      <  3:239616/149‑1 (MQ=255)                                                                                  cTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTaa                                                                >  6:295816/1‑149 (MQ=255)                                                                                   tGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCagtaccttgtcgccgtcgcgcaccaggccgatggcgccgcccgccgcggcctctggcgaggcgtggccgatcgacagg                                                                     >  7:160510‑M1/1‑65 (MQ=255)                                                                                   tGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCagtaccttgtcgccgtcgcgcaccaggccgatggcgccgcccgccgcggcctctggcgaggcgtggccgatcgacagg                                                                     <  8:160510‑M1/143‑79 (MQ=255)                                                                                      gCAAGGCCTGCGCCCTGCTCACCGACGGTCCCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGc                                                            >  1:37805/1‑149 (MQ=255)                                                                                                       cTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTTGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTgg                                            <  3:33073/148‑1 (MQ=255)                                                                                                         cACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGt                                           >  3:260973/1‑147 (MQ=255)                                                                                                          aCCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAg                                        >  1:263884/1‑149 (MQ=255)                                                                                                          aCCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAg                                        >  6:280846/1‑149 (MQ=255)                                                                                                            cGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCg                                      <  6:341429/149‑1 (MQ=255)                                                                                                                 gTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATg                                   >  8:57834/1‑147 (MQ=255)                                                                                                                 gTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGaa                                 <  8:126630/149‑1 (MQ=255)                                                                                                                      ttCTCGGGCGGTACCTTGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCt                            >  2:275937/1‑149 (MQ=255)                                                                                                                         tcGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGgc                         >  7:329002/1‑149 (MQ=255)                                                                                                                           gggCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAAc                                                   >  8:293792/1‑121 (MQ=255)                                                                                                                           gggCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAAc                                                   <  7:293792/121‑1 (MQ=255)                                                                                                                           gggCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGgcg                        >  4:267700/1‑148 (MQ=255)                                                                                                                           gggCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGgc                         <  1:44708/147‑1 (MQ=255)                                                                                                                              cGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAAc                    <  4:260973/149‑1 (MQ=255)                                                                                                                                  aCCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCg                >  6:127176/1‑149 (MQ=255)                                                                                                                                        ggCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGa          <  7:57834/149‑1 (MQ=255)                                                                                                                                        ggCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGa          <  8:329002/149‑1 (MQ=255)                                                                                                                                         gCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGAg         <  5:173930/149‑1 (MQ=255)                                                                                                                                          ccTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTgatcgacaggcccgaggtaccgcccgagaagcgaccgtcggtgagcagggcgcaggccttgccca              >  7:160510‑M2/1‑78 (MQ=255)                                                                                                                                          ccTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTgatcgacaggcccgaggtaccgcccgagaagcgaccgtcggtgagcagggcgcaggccttgccca              <  8:160510‑M2/143‑66 (MQ=255)                                                                                                                                           cTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTaa                                                                <  6:324178/92‑1 (MQ=255)                                                                                                                                           cTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTaa                                                                >  5:324178/1‑92 (MQ=255)                                                                                                                                            tGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGTGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGAGCAg      >  6:306028/1‑149 (MQ=255)                                                                                                                                             gTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGAGCAg      >  6:243426/1‑148 (MQ=255)                                                                                                                                              tCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGTGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGAGCAg      <  5:306028/147‑1 (MQ=255)                                                                                                                                              tCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTgatcgacaggcccgaggtaccgcccgagaagcgaccgtcggtgagcagggcgcaggccttgcccaggcctttgga    <  7:116794‑M2/149‑76 (MQ=255)                                                                                                                                                gATCagtaccttgtcgccgtcgcgcaccaggccgatggcgccgcccgccgcggcctctggcgaggcgtggccgatcgacaggcccgaggtaccgcccgagaagcgaccgtcggtgagcagggcgcaggccttgcccaggcctttggact  >  8:191220‑M1/1‑4 (MQ=255)                                                                                                                                                gATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGAGCAGGAc   >  8:51185/1‑148 (MQ=255)                                                                                                                                                   |                                                                                                                                                  ATCATCCGCTACGAAGGCCCGAAAGGCGGCCCGGGCATGCAAGAAATGCTCTACCCGACCTCGTACCTCAAGTCCAAAGGCCTGGGCAAGGCCTGCGCCCTGCTCACCGACGGTCGCTTCTCGGGCGGTACCTCGGGCCTGTCGATCGGCCACGCCTCGCCAGAGGCCGCGGCGGGCGGCGCCATCGGCCTGGTGCGCGACGGCGACAAGGTACTGATCGACATCCCTAACCGCTCGATCAACCTGCTGGTCAGCGATGAAGAGCTGGCGCAACGCCGTGTCGAGCAGGACA  >  NC_002947/5850718‑5851009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.