New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2269992	36 (0.550)	3 (0.050)	3/248	NT	7.4%	coding (795/1212 nt)	metZ	O‑succinylhomoserine sulfhydrylase
	?	NC_002947	= 2270034	41 (0.670)					coding (837/1212 nt)	metZ	O‑succinylhomoserine sulfhydrylase

TTGCCGGCCGTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTGAAGTCAAGGGGG  >  NC_002947/2269892‑2270176                                                                                                                                               |                                                                                                                                               ttGCCGGCCGTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTcaggcc                                                                                                                                          >  3:361517‑M2/1‑143 (MQ=255)    ccggccgTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTcaggccct                                                                                                                                        >  6:92216‑M2/1‑140 (MQ=255)    ccggccgTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTg                                                                                                                                       <  1:136194/149‑1 (MQ=255)    ccggccgTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTg                                                                                                                                       >  8:166837/1‑149 (MQ=255)     cggccgTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTgg                                                                                                                                      <  4:71843/149‑1 (MQ=255)     cggccgTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTgg                                                                                                                                      >  4:308829/1‑149 (MQ=255)      ggccgTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGc                                                                                                                                     <  7:166837/149‑1 (MQ=255)                atgaaaTGATAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTg                                                                                                                           <  8:364823/146‑1 (MQ=255)                aGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGc                                                                                                                             <  1:381031/147‑1 (MQ=255)                   aaaTGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGag                                                                                                                        <  7:45486/149‑1 (MQ=255)                        aaaGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAgcagca                                                                                                                   <  6:339784/149‑1 (MQ=255)                          agaagTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAgg                                                                                                                 >  7:2803/1‑149 (MQ=255)                                    ggTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGCCGGCGtaat                                                                                                       >  6:231361/1‑146 (MQ=255)                                      tttCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGgag                                                                                                      >  4:251751/1‑148 (MQ=255)                                      tttCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGgag                                                                                                      >  2:244751/1‑148 (MQ=255)                                             cGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGc                                                                                               <  3:178030/148‑1 (MQ=255)                                                   gCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGc                                                                                        >  3:1108/1‑149 (MQ=255)                                                     aGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCg                                                                                      <  1:244751/149‑1 (MQ=255)                                                            aCCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGcc                                                                               <  6:131084/149‑1 (MQ=255)                                                            aCCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGcc                                                                               <  6:220507/149‑1 (MQ=255)                                                                      cGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCg                                                                     <  1:72957/149‑1 (MQ=255)                                                                        ttCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCgca                                                                   <  1:75592/149‑1 (MQ=255)                                                                                   gATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTgg                                                        <  6:90269/149‑1 (MQ=255)                                                                                          aCCAACGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAgc                                                  <  4:368693/148‑1 (MQ=255)                                                                                            cAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTcaggcccttggtgaagatccaggcgttgaacgg                                                                                                               >  8:323203‑M2/1‑52 (MQ=255)                                                                                            cAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTcaggcccttggtgaagatccaggcgttgaacgg                                                                                                               <  7:323203‑M2/85‑34 (MQ=255)                                                                                            cAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACTAACTGGCCAAgcgc                                                >  8:278338/1‑148 (MQ=255)                                                                                            cAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAgcgc                                                >  7:308607/1‑148 (MQ=255)                                                                                              aGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTcaggcccttggtgaagatccaggcgttgaacgggctgagggttggacctgcggttcgcaggaaacccaccacttctttcatttgctcagtacggccgg                                              <  4:179809‑M2/148‑99 (MQ=255)                                                                                               gggCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGa                                            <  6:172152/149‑1 (MQ=255)                                                                                                  ccTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCAcc                                                                       >  1:233891/1‑119 (MQ=255)                                                                                                  ccTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCAcc                                                                       >  1:240109/1‑119 (MQ=255)                                                                                                  ccTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCAcc                                                                       <  2:233891/119‑1 (MQ=255)                                                                                                  ccTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCAcc                                                                       <  2:240109/119‑1 (MQ=255)                                                                                                      gAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCgg                                     <  4:1108/149‑1 (MQ=255)                                                                                                           gCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGAt                                           >  4:286340/1‑138 (MQ=255)                                                                                                           gCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGAt                                           <  3:286340/138‑1 (MQ=255)                                                                                                           gCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTg                                <  1:81610/149‑1 (MQ=255)                                                                                                               cgcCTGCGTATGCGTGCGCACTGCGAAAGCGCTGAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGt                              <  3:251751/147‑1 (MQ=255)                                                                                                               cgcCTGCGTAGGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGCACTGGCCAAGCGCCAGATTAGCGGGTTTGGt                              <  8:2803/147‑1 (MQ=255)                                                                                                                     cGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGt                      >  5:176590/1‑149 (MQ=255)                                                                                                                     cGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGt                      >  6:77531/1‑149 (MQ=255)                                                                                                                     cGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGt                      <  3:308829/149‑1 (MQ=255)                                                                                                                            gtgcgCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCttt               >  3:131809/1‑149 (MQ=255)                                                                                                                             tgcgCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTg              <  6:176590/149‑1 (MQ=255)                                                                                                                                  aCTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTGAAGt          >  1:327155/1‑148 (MQ=255)                                                                                                                                      cGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGG‑TTTGGTGCAGTGGTCAGCTTTGAAGTCAAggg    >  3:198955/1‑149 (MQ=255)                                                                                                                                       aaaaGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTGAAGTCAAggg    >  2:206333/2‑149 (MQ=255)                                                                                                                                         aaGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTGAAGTCAAggggg  <  8:308607/149‑1 (MQ=255)                                                                                                                                         aaGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTGAAGTCAAgg     <  3:74500/146‑1 (MQ=255)                                                                                                                                         aaGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTGAAGTCAAgg     >  4:74500/1‑146 (MQ=255)                                                                                                                                               tCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGt                                                                                                 >  7:235055/1‑48 (MQ=255)                                                                                                                                               tCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGt                                                                                                 <  8:235055/48‑1 (MQ=255)                                                                                                                                               tCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTg                                <  2:37171/113‑1 (MQ=255)                                                                                                                                               tCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTg                                >  1:37171/1‑113 (MQ=255)                                                                                                                                               |                                                                                                                                               TTGCCGGCCGTACTGAGCAAATGAAAGAAGTGGTGGGTTTCCTGCGAACCGCAGGTCCAACCCTCAGCCCGTTCAACGCCTGGATCTTCACCAAGGGCCTGGAAACGCTGCGCCTGCGTATGCGTGCGCACTGCGAAAGCGCTCAGGCCCTGGCCGAATGGCTGGAGCAGCAGGACGGCGTGGAGAAGGTGCATTACGCCGGCCTGCCCAGCCACCCGCAGCACGAACTGGCCAAGCGCCAGATGAGCGGTTTTGGTGCAGTGGTCAGCTTTGAAGTCAAGGGGG  >  NC_002947/2269892‑2270176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.