New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2560802	56 (0.860)	3 (0.050)	3/250	NT	5.5%	coding (629/786 nt)	PP_2244	TauE‑like transmembrane protein
	?	NC_002947	= 2560846	50 (0.810)					coding (585/786 nt)	PP_2244	TauE‑like transmembrane protein

GGAGATCCGCCCGGTGAGGTGGCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAGGGTGACCATTATTCCAAGCACCACGCCGGTCAGCACTGTGAGGATGTTCA  >  NC_002947/2560711‑2560994                                                                                                                                        |                                                                                                                                                     ggAGATCCGCCCGGTGAGGTGGCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCgg                                                                                                                                         <  2:51475/149‑1 (MQ=255)   agaTCCGCCCGGTGAGGTGGCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTa                                                                                                                                       <  4:82956/149‑1 (MQ=255)   agaTCCGCCCGGTGAGGTGGCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTa                                                                                                                                       <  7:342773/149‑1 (MQ=255)                   gTGGCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACggg                                                                                                                       >  3:234148/1‑149 (MQ=255)                    tGGCTACCCAGGTAGATGCCTGGCATCGAGCCCAGCAGCACGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGt                                                                                                                      <  8:358605/149‑1 (MQ=255)                     ggCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCACGTAGCCCAGCAGCCACCAATCCATGTTGCCCATGCCCGCCTGGCCCAGGCCCGCTACAAACGTCAGTGGCACGGCGTGGGCAATATCGGTACCGACCAGGCCACCGGt                                                                                                                      >  2:196791/1‑148 (MQ=255)                      gCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGa                                                                                                                    <  7:18697/149‑1 (MQ=255)                             aGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGaa                                                                                                             >  7:170477/1‑149 (MQ=255)                                tAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACgg                                                                                                          <  6:262007/149‑1 (MQ=255)                                       cTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAcag                                                                                                    >  7:98556/1‑148 (MQ=255)                                       cTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAcag                                                                                                    >  3:58353/1‑148 (MQ=255)                                        tGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAcag                                                                                                    >  6:312650/1‑147 (MQ=255)                                        tGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAcag                                                                                                    >  6:17016/1‑147 (MQ=255)                                        tGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAcag                                                                                                    >  3:115775/1‑147 (MQ=255)                                         ggCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAAttt                                                                                                                                            <  7:319330/106‑1 (MQ=255)                                         ggCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAAttt                                                                                                                                            >  8:319330/1‑106 (MQ=255)                                                aGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAgc                                                                                          <  8:98556/149‑1 (MQ=255)                                                aGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAgc                                                                                          <  2:368829/149‑1 (MQ=255)                                                 gCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGT‑GCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAgcgc                                                                                        <  1:268231/149‑1 (MQ=255)                                                    cagcagcagGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAgc                                                                                          >  3:142389/1‑145 (MQ=255)                                                    cagcagcagGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAgc                                                                                          <  4:142389/145‑1 (MQ=255)                                                    cagcagcagGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCa                                                                                      <  1:34211/149‑1 (MQ=255)                                                       cagcagGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGTCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCg                                                                                   <  5:17016/149‑1 (MQ=255)                                                          cagGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTAc                                                                                <  4:58353/149‑1 (MQ=255)                                                              tatcccAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTGAGTGGCACGGCGTTGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAAGAGCGCCACCGTACCCa                                                                             <  1:196791/145‑1 (MQ=255)                                                              tAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAc                                                                                                      >  2:81529/1‑123 (MQ=255)                                                              tAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAc                                                                                                      <  1:81529/123‑1 (MQ=255)                                                                gCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAcag                                                                                                    >  8:193830/1‑123 (MQ=255)                                                                gCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAcag                                                                                                    <  7:193830/123‑1 (MQ=255)                                                                gCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAggg                                                                          >  1:408524/1‑149 (MQ=255)                                                                gCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAggg                                                                          >  2:321760/1‑149 (MQ=255)                                                                   cagcagCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGgcgc                                                                       <  8:170477/149‑1 (MQ=255)                                                                   cagcagCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGgcgc                                                                       <  4:115775/149‑1 (MQ=255)                                                                     gcagcGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCa                                                                     <  4:234148/149‑1 (MQ=255)                                                                      cagcGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAg                                                                    >  4:189767/1‑149 (MQ=255)                                                                      aagcGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAg                                                                    <  6:30703/148‑1 (MQ=255)                                                                          gACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGTGTACAGCAGGAACAGCGCCACCTTACCCAGGGCGCCAGCAcc                                                                <  6:293754/149‑1 (MQ=255)                                                                               aTCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTAAAGCAGGAACAGAGACACCGTACCCATGGCGCCAGCCCCGATg                                                            >  8:219275/1‑148 (MQ=255)                                                                                    tGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGtgggcaacatggattggtcgctgctgggctacctgctgctgggctcgctgccaggcatctaccttggtagccacctcaccgggcggatctccgacc                                                      <  1:223192‑M2/149‑97 (MQ=255)                                                                                     gTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGt                                                       >  7:97929/1‑147 (MQ=255)                                                                                      ttGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGGGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGa                                                     <  7:96221/148‑1 (MQ=255)                                                                                        gCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAgg                                                   <  3:189767/148‑1 (MQ=255)                                                                                         cccATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGtgggcaacatggattggtcgctgctgggctacctgctgctgggctcgctgccaggcatctacctgggtagccacctcaccgggcggatctccgaccgcgtg                                                 <  7:50937‑M2/149‑102 (MQ=255)                                                                                               cccGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGtgggcaacatggattggtcgctgctgggctacctgctgctgggctcgctgccaggcatctacctgggtagccacctcaccgggcggatctccgaccgcgtgctgcgc                                           >  8:50937‑M2/1‑42 (MQ=255)                                                                                                      ggCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAGGGTGACCATTATTcc                                     >  3:204228/1‑148 (MQ=255)                                                                                                       gCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAGGGTGACCATTATTCCaa                                   <  5:361750/149‑1 (MQ=255)                                                                                                        ccGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACggg                                                                                                         >  1:351871/1‑78 (MQ=255)                                                                                                        ccGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACggg                                                                                                         <  2:351871/78‑1 (MQ=255)                                                                                                               ccGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCa                                                                     <  1:203823/107‑1 (MQ=255)                                                                                                               ccGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCa                                                                     >  2:203823/1‑107 (MQ=255)                                                                                                               ccGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCg                                                               <  5:217073/113‑1 (MQ=255)                                                                                                               ccGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCg                                                               >  6:217073/1‑113 (MQ=255)                                                                                                                    aCCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGAAGGTGAGGGTGACCATTATTCCAAGCACCACGCCGGt                      >  4:374648/1‑149 (MQ=255)                                                                                                                          gTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAGGGTGACCATTATTCCAAGcacca                             <  4:319016/136‑1 (MQ=255)                                                                                                                                 gCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAGGGTGACCATTATTCCAAGCACCACGCCGGTCAGCACTGTGAg          <  5:312650/148‑1 (MQ=255)                                                                                                                                        gTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAGGGTGACCATTATTCCAAGCACCACGCCGGTCAGCACTGTGAGGATGTTCa  <  7:219275/149‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                     GGAGATCCGCCCGGTGAGGTGGCTACCCAGGTAGATGCCTGGCAGCGAGCCCAGCAGCAGGTAGCCCAGCAGCGACCAATCCATGTTGCCCATGCCCGCGTGGCCGAGGCCCGCTACCAAGGTCAGTGGCACGGCGTGGGCAATTTCGGTACCGACCAGGCGACGGGTGACCAGGAACGGGTACAGCAGGAACAGCGCCACCGTACCCAGGGCGCCAGCACCGATGGAGGTGAGGGTGACCATTATTCCAAGCACCACGCCGGTCAGCACTGTGAGGATGTTCA  >  NC_002947/2560711‑2560994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.