New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2823827	47 (0.720)	4 (0.060)	4/250	NT	8.4%	intergenic (+2/‑98)	PP_5528/iorA‑I	hypothetical protein/isoquinoline 1‑oxidoreductase subunit alpha
	?	NC_002947	= 2823848	43 (0.700)					intergenic (+23/‑77)	PP_5528/iorA‑I	hypothetical protein/isoquinoline 1‑oxidoreductase subunit alpha

CCCGTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGATATGCCTCTGCTATGG  >  NC_002947/2823701‑2823993                                                                                                                                                    |                                                                                                                                                  cccGTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGc                                                                                                                                                  >  3:219835‑M2/1‑148 (MQ=255)  ccGTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGcc                                                                                                                                                 <  1:224073‑M2/149‑3 (MQ=255)    gTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGcct                                                                                                                                                <  4:395964‑M2/148‑4 (MQ=255)    gTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGc                                                                                                                                                  <  8:337799‑M2/146‑2 (MQ=255)    gTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGc                                                                                                                                                  <  8:332062‑M2/146‑2 (MQ=255)    gTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGc                                                                                                                                                  >  7:337799‑M2/1‑145 (MQ=255)    gTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGc                                                                                                                                                  >  7:332062‑M2/1‑145 (MQ=255)     tGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTCCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGcctca                                                                                                                                              >  3:197801‑M2/1‑144 (MQ=255)                    ggTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCcaca                                                                                                                               <  2:224073/149‑1 (MQ=255)                             gCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAg                                                                                                                      >  4:174799/1‑149 (MQ=255)                             gCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAg                                                                                                                      >  6:218109/1‑149 (MQ=255)                              cTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATTACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAg                                                                                                                      <  7:332922/148‑1 (MQ=255)                              cTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAg                                                                                                                      <  3:163883/148‑1 (MQ=255)                                 gtggAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGGATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCg                                                                                                                    <  1:305461/147‑1 (MQ=255)                                          cTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCgcgc                                                                                                                                      <  4:359961/120‑1 (MQ=255)                                          cTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCgcgc                                                                                                                                      >  3:359961/1‑120 (MQ=255)                                          cTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCAAATGATCAAAGCGATAACCAAgg                                                                                                          <  1:323165/148‑1 (MQ=255)                                             gTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTg                                                                                                       >  8:79334/1‑148 (MQ=255)                                             gTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGt                                                                                                      <  2:305352/149‑1 (MQ=255)                                             gTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGt                                                                                                      >  4:193779/1‑149 (MQ=255)                                               aTTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTAACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCg                                                                                                    >  5:140136/1‑149 (MQ=255)                                               aTTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTGTAAGGCGAATAGATTCGGGAGGGCATGACGCTCTTTAAGTCGGCCTCACGGCGCGCACCCCCATGAGCAAAGCGAAAAACACGGTTGGCg                                                                                                    >  6:392125/1‑149 (MQ=255)                                                      ccTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCGACATGATCAAAGCGATAACCAAGGTTGTCGGCATcc                                                                                              >  8:193644/1‑147 (MQ=255)                                                         gTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTcgc                                                                                                                                        <  7:86746/103‑1 (MQ=255)                                                         gTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTcgc                                                                                                                                        >  8:86746/1‑103 (MQ=255)                                                          tCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACt                                                                                         <  3:193779/149‑1 (MQ=255)                                                          tCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACt                                                                                         <  7:79334/149‑1 (MQ=255)                                                            aCCCATCTTATTTCCTTTCCATTCGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACttt                                                                                       <  4:253839/149‑1 (MQ=255)                                                             cccAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTa                                                                                      <  6:91112/149‑1 (MQ=255)                                                                 gCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAg                                                                                    >  3:208780/1‑147 (MQ=255)                                                                   ttATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCa                                                                                  >  3:112482/1‑147 (MQ=255)                                                                     aTTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCagag                                                                               >  5:162164/1‑148 (MQ=255)                                                                         cctttccATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGaaa                                                                           >  2:409167/1‑148 (MQ=255)                                                                          ctttccATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATa                                                                         <  1:16769/149‑1 (MQ=255)                                                                            ttccATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATAc                                                                        >  8:314191/1‑148 (MQ=255)                                                                                    gCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCAAGCaaa                                                                <  3:395964/148‑1 (MQ=255)                                                                                                gTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACAAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTaa                                                   <  6:201566/149‑1 (MQ=255)                                                                                                 ttGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAAc                                                  <  6:162164/149‑1 (MQ=255)                                                                                                     ccGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGa                                               >  3:357912/1‑148 (MQ=255)                                                                                                        tttAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGcctcacgaatctattcgccttaaacgggcaaccagccacccggccaatggaaaggaaataagctgggtgacaggcaccaataccagcacttccaccagcaccat                                           <  7:74299‑M2/149‑105 (MQ=255)                                                                                                           aaGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCTATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCg                                         <  3:174799/148‑1 (MQ=255)                                                                                                              gCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCgcagc                                     <  7:314191/149‑1 (MQ=255)                                                                                                              gCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCg                                         >  1:189359/1‑145 (MQ=255)                                                                                                              gCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATA‑CATGCAAATGTTAATCATTAACGGACAGTCgcag                                      >  1:155652/1‑147 (MQ=255)                                                                                                                gAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCgca                                       <  2:189359/145‑1 (MQ=255)                                                                                                                gAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACAATGCAAATGTTAATAATTATCGGACAGTCGcagcag                                   >  6:257368/1‑149 (MQ=255)                                                                                                                     gATTCGTGAGGGCATGACGCTGTTTAAGTCTGcctcacgaatctattcgccttaaacgggcaaccagccacccggccaatggaaaggaaataagctgggtgacaggcaccaataccagcacttccaccagcaccattaccgggaaactc                              >  8:74299‑M2/1‑32 (MQ=255)                                                                                                                     gATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGa                              >  7:45862/1‑149 (MQ=255)                                                                                                                       ttCGTGAGGGCATGACGCTGTTTAAGTCTGcctcacgaatctattcgccttaaaccggcaaccagccaaccggccaatggaaaggaaataagctgggtgacaggcaccaataccagcacttccaccagcaccattaccgggaaact                               <  6:346872‑M2/146‑117 (MQ=255)                                                                                                                          gTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCTATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTg                         >  5:73285/1‑149 (MQ=255)                                                                                                                          gTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGtt                          <  7:108258/148‑1 (MQ=255)                                                                                                                              gggCATGACGCTGTTTAAGTCTGcctcacgaatctattcgccttaaacgggcaaccagccacccggccaatggaaaggaaataagctgggtgacaggcaccaataccagcacttccaccagcaccattaccgggaaactcagatcacgg                     >  6:134587‑M2/1‑23 (MQ=255)                                                                                                                                  aTGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGat                 <  5:218109/149‑1 (MQ=255)                                                                                                                                   tGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGata                <  4:357912/149‑1 (MQ=255)                                                                                                                                           tttAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGATATGCctc          <  4:208780/147‑1 (MQ=255)                                                                                                                                               aGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGATATGCCTCTGCTAt    <  1:409167/149‑1 (MQ=255)                                                                                                                                               aGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGATATGCCTCTGCTAt    <  8:45862/149‑1 (MQ=255)                                                                                                                                                 tCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGATATGCCTCTGCTATgg  <  4:112482/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CCCGTGATCTGAGTTTCCCGGTAATGGTGCTGGTGGAAGTGCTGGTATTGGTGCCTGTCACCCAGCTTATTTCCTTTCCATTGGCCGGGTGGCTGGTTGCCCGTTTAAGGCGAATAGATTCGTGAGGGCATGACGCTGTTTAAGTCTGCCTCACGTCGCGCACCCACATGATCAAAGCGATAACCAAGGTTGTCGGCATCAACACTTTAAGCAGAGGAAATACCATGCAAATGTTAATCATTAACGGACAGTCGCAGCAGGTTGACGTTGCCCCCGATATGCCTCTGCTATGG  >  NC_002947/2823701‑2823993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.