New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2939916 =	58 (0.890)	3 (0.050)	3/254	NT	5.8%	coding (226/648 nt)	PP_2572	hypothetical protein
	?	NC_002947	2939957 =	41 (0.660)					coding (185/648 nt)	PP_2572	hypothetical protein

CCGGCCTCGCGCAGGGCCGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATCTTTTTTCCTTGTGGGTGCGCATTGGGGTAAGGGCAACCGGC  >  NC_002947/2939813‑2940105                                                                                                                                                 |                                                                                                                                                     gccacgaattcagcgaagtgctcaacgacctggtcgactactttctgctcggcgatatccagttgctcgagcgcttcaagcaagaccatcaactgcccgacgaCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGgtcgtc                                                                                                                                                  >  4:344845‑M1/104‑149 (MQ=255) ccGGCCTCGCGCAGGGCCGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGgtcgtc                                                                                                                                                  <  2:67885/149‑1 (MQ=255)     ccTCGCGCAGGGCCGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCggg                                                                                                                                               >  4:214510/1‑148 (MQ=255)            cAGGGCCGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGAt                                                                                                                                       <  1:60130/149‑1 (MQ=255)             aGGGCCGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATg                                                                                                                                      <  3:355000/149‑1 (MQ=255)             aGGGCCGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATg                                                                                                                                      <  5:302077/149‑1 (MQ=255)                gCCGGGGTGTGGTTATTGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTc                                                                                                                                   >  4:279011/1‑149 (MQ=255)                 ccGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGgtc                                                                                                                                                     >  6:257880/1‑130 (MQ=255)                 ccGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGgtc                                                                                                                                                     <  5:257880/130‑1 (MQ=255)                 ccGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTct                                                                                                                                  <  7:50909/149‑1 (MQ=255)                              aTCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCt                                                                                                                     >  6:237260/1‑149 (MQ=255)                                   gggTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAg                                                                                                                 >  2:32031/1‑148 (MQ=255)                                   gggTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGAGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGACGCTGTCACCGTGGCTGAACGCACAGGCCAGGTCGTCGGGCAGTTGATGGTGTTGCTTGAAGCGCTagag                                                                                                                 >  3:258607/1‑148 (MQ=255)                                              aTGCGGTAGGTCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGTCATTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATc                                                                                                     <  3:144182/149‑1 (MQ=255)                                               tGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCg                                                                                                    >  3:225617/1‑149 (MQ=255)                                                 cGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGcc                                                                                                  <  6:396738/149‑1 (MQ=255)                                                  ggTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGcc                                                                                                  >  5:107911/1‑148 (MQ=255)                                                  ggTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCg                                                                                                 <  6:107911/149‑1 (MQ=255)                                                      gggCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAg                                                                                               >  4:24888/1‑147 (MQ=255)                                                      gggCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGc                                                                                              <  7:309660/148‑1 (MQ=255)                                                      gggCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCa                                                                                             <  3:24888/149‑1 (MQ=255)                                                        gCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAgcgc                                                                                                                      >  3:71056/1‑122 (MQ=255)                                                        gCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAgcgc                                                                                                                      <  4:71056/122‑1 (MQ=255)                                                          aGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGaaa                                                                                         <  1:32031/149‑1 (MQ=255)                                                           ggTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAg                                                                                                                 >  4:318872/1‑124 (MQ=255)                                                           ggTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAg                                                                                                                 <  3:318872/124‑1 (MQ=255)                                                               gTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAagtagt                                                                                    >  7:189388/1‑149 (MQ=255)                                                                tCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTTGGTGAACGCACCGGCCAGGTCGTCGTGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTc                                                                                   <  7:341485/149‑1 (MQ=255)                                                                tCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTc                                                                                   <  8:189388/149‑1 (MQ=255)                                                                        ggCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGt                                                                           >  1:159779/1‑149 (MQ=255)                                                                               ggCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCAGCGTGGGTTATCGCACCTGCCAGGTAGTAGTTCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGTGCAGAAAGTAGTCGACCAGGTCGTTGAg                                                                    <  7:275795/149‑1 (MQ=255)                                                                                gcagcaCGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAAc                                                                                                             <  4:373507/107‑1 (MQ=255)                                                                                gcagcaCGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAAc                                                                                                             >  3:373507/1‑107 (MQ=255)                                                                                gcagcaCGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGc                                                                   <  6:246011/149‑1 (MQ=255)                                                                                       gATGCCTTCGCCCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGtt                                                                       >  6:418465/1‑138 (MQ=255)                                                                                       gATGCCTTCGCCCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGtt                                                                       <  5:418465/138‑1 (MQ=255)                                                                                                 cgcACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTg                                                  >  7:192890/1‑149 (MQ=255)                                                                                                   gacgacctggccggtgcgttcacccacggtgacagcggcgaccaggTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGgc                                                >  4:344845‑M2/47‑149 (MQ=255)                                                                                                   cACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGc                                                            <  5:112121/137‑1 (MQ=255)                                                                                                   cACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGc                                                            >  6:112121/1‑137 (MQ=255)                                                                                                      cGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTCCg                                                             >  8:361298/1‑133 (MQ=255)                                                                                                        cctggccggtgggttcacccacggtgacagcggcgaccaggTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCa                                                                  <  8:155679‑M2/85‑1 (MQ=255)                                                                                                        cctggccggtgggttcacccacggtgacagcggcgaccaggTCGTCGGCCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCa                                                                  >  7:155679‑M2/42‑126 (MQ=255)                                                                                                        CCTGGTCGCCGGTGTCTCCGGGGGTGAAGGCAGCGGCCAGGTCGTCGGGCAGGTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATc                                           >  4:258607‑M1/1‑149 (MQ=255)                                                                                                        CCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATc                                           >  3:279011‑M1/1‑149 (MQ=255)                                                                                                               gccgcTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATCTTTTTTc                                    >  1:280822/1‑149 (MQ=255)                                                                                                                ccgcTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATCTTTTTTcc                                   <  5:237260/149‑1 (MQ=255)                                                                                                                               gTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTc                                                     >  4:107498/1‑116 (MQ=255)                                                                                                                               gTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTc                                                     <  3:107498/116‑1 (MQ=255)                                                                                                                                   aCGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGGACTTCGCTGAATTCGTGGCGCATCTTTTTTCCTTGTGGGTGCGCATTgggg                >  4:398363/1‑149 (MQ=255)                                                                                                                                       aCCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATCTTTTTTCCTTGTGGGTGCGCATTGGGGTAAg            >  5:224664/1‑149 (MQ=255)                                                                                                                                             caggTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACAAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATCTTTTTTCCTTGTGGGTGCGCATTGGGGTAAGGGCAAc      >  1:118777‑M2/5‑149 (MQ=255)                                                                                                                                                 tcgtcgGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATCTTTTTTCCTTGTGGGTGCGCATTGGGGTAAGGGCAACCGGc  >  1:150410/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CCGGCCTCGCGCAGGGCCGGGGTGTGGTTATCGAGGGTGAACAGGATGCGGTAGGGCAGGTTGTCGACACCGGCCAGCGGCAGCACGATGCCTTCGCGCACCGCCTGGTCGCCGCTGTCACCGTGGGTGAACGCACCGGCCAGGTCGTCGGGCAGTTGATGGTCTTGCTTGAAGCGCTCGAGCAACTGGATATCGCCGAGCAGAAAGTAGTCGACCAGGTCGTTGAGCACTTCGCTGAATTCGTGGCGCATCTTTTTTCCTTGTGGGTGCGCATTGGGGTAAGGGCAACCGGC  >  NC_002947/2939813‑2940105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.