New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2973290 =	50 (0.770)	3 (0.050)	3/250	NT	6.6%	coding (584/1713 nt)	PP_2600	hypothetical protein
	?	NC_002947	2973324 =	37 (0.600)					coding (550/1713 nt)	PP_2600	hypothetical protein

TTGCAGGTGCACACCCAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCGGGCATCGTAGGGCGCGGCGATCACCTGGT  >  NC_002947/2973178‑2973470                                                                                                                                                    |                                                                                                                                                   ttGCAGGTGCACACCCAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGc                                                                                                                                                   >  8:387313/1‑148 (MQ=255)     ggcgccctgctgccacgcttgcgcaagaccatgcgcgaaacctcgttcatgggcatgccgatcatggccggtgccgaccttgccgccttcctcaacatgacccgctcgcCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAg                                                                                                                                                >  5:404688‑M1/110‑148 (MQ=255)      ggTGCACACCCAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCgg                                                                                                                                             <  4:137436/149‑1 (MQ=255)       gTGCACACCCAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCggg                                                                                                                                            >  4:290039/1‑149 (MQ=255)        tGCACACCCAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGt                                                                                                                                           <  1:362148/149‑1 (MQ=255)             acCCAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGt                                                                                                                                      <  7:49881/149‑1 (MQ=255)                cAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGa                                                                                                                                   <  7:387313/149‑1 (MQ=255)                   gTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGa                                                                                                                                <  5:75620/149‑1 (MQ=255)                    tCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGaa                                                                                                                               <  5:19086/149‑1 (MQ=255)                    tCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTAGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGaa                                                                                                                               <  1:287035/149‑1 (MQ=255)                      cTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAgg                                                                                                                             >  4:324577/1‑149 (MQ=255)                       tgtgCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCAGGTTGAGGAAggc                                                                                                                            >  4:174063/1‑149 (MQ=255)                         tgCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAggcgg                                                                                                                          >  5:381884/1‑149 (MQ=255)                         tgCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAggcgg                                                                                                                          <  3:290039/149‑1 (MQ=255)                             gATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCTAg                                                                                                                      >  4:174726/1‑149 (MQ=255)                                        gcgcgcCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCgg                                                                                                           >  6:174694/1‑149 (MQ=255)                                              caccaGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGa                                                                                                     >  2:91760/1‑149 (MQ=255)                                                      ccACACCGTTTACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGTCCATGATCGGCAt                                                                                              <  6:107099/148‑1 (MQ=255)                                                       cacaCCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGc                                                                                            <  1:189368/149‑1 (MQ=255)                                                         cacCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCAt                                                                                                                                        >  4:341107/1‑103 (MQ=255)                                                         cacCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCAt                                                                                                                                        <  3:341107/103‑1 (MQ=255)                                                                 aCCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGa                                                                                  <  3:324577/149‑1 (MQ=255)                                                                        acctGGCCCG‑CCATGGTCGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTGATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTcg                                                                           >  5:310378/4‑149 (MQ=255)                                                                             gCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCAt                                                                      >  7:311708/1‑149 (MQ=255)                                                                                   ccATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCTAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCtt                                                                <  3:174726/149‑1 (MQ=255)                                                                                   ccATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCtt                                                                <  6:381884/149‑1 (MQ=255)                                                                                            ggCCAGGTGGTACAGGTGGCGGCCAATGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGTAGTCGGGAAGGTCGGCAACGGCCATGATCGGCATGCGCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGc                                                        <  4:307035/149‑1 (MQ=255)                                                                                              ccAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACTGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGt                                                      >  4:324552/1‑149 (MQ=255)                                                                                               cAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGGCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTg                                                     <  1:353862/149‑1 (MQ=255)                                                                                                       aCAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAgg                                             >  8:375072/1‑149 (MQ=255)                                                                                                       aCAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAgg                                             >  3:309270/1‑149 (MQ=255)                                                                                                             ggcggcCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCa                                       >  3:169752/1‑149 (MQ=255)                                                                                                             ctcgcccaaagccctgctgcacgtgtgcaagcgctttggGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGcc                                        >  5:404688‑M2/40‑148 (MQ=255)                                                                                                               cggcCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAAc                                     >  1:258951/1‑149 (MQ=255)                                                                                                               cggcCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAAc                                     <  5:174694/149‑1 (MQ=255)                                                                                                                  ccaaagccctgctgcacgtgtgcaagcgctttggGCGAGCGGGTCATGTTGAgg                                                                                                                                 >  2:333458‑M2/35‑54 (MQ=255)                                                                                                                  ccaaagccctgctgcacgtgtgcaagcgctttggGCGAGCGGGTCATGTTGAgg                                                                                                                                 <  1:333458‑M2/20‑1 (MQ=255)                                                                                                                     AAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCTCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTcgcg                               >  4:309270‑M1/1‑149 (MQ=255)                                                                                                                      AGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTgc                                                              <  5:281671‑M1/117‑1 (MQ=255)                                                                                                                      AGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTgc                                                              >  6:281671‑M1/1‑117 (MQ=255)                                                                                                                      AGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCgg                              >  8:311708‑M1/1‑149 (MQ=255)                                                                                                                               acacGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAg                                                                                 <  8:195600/89‑1 (MQ=255)                                                                                                                                 acGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCGGGCATCGTAggg                   >  7:95997/1‑149 (MQ=255)                                                                                                                                    tGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCGGGCATCGTAGGgcgc                >  6:120536/1‑149 (MQ=255)                                                                                                                                       atcggggCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTcgcg                                                                         <  4:249597/85‑1 (MQ=255)                                                                                                                                       agcagGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGc                                                        <  7:144382/106‑1 (MQ=255)                                                                                                                                       agcagGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGc                                                        >  8:144382/1‑106 (MQ=255)                                                                                                                                        tcagGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCGGGCATCGTAGGGCgcggcg            <  2:258951/148‑1 (MQ=255)                                                                                                                                              ctttggGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCGGGCATCGTAGGGCGCGGCGATCAcc      >  2:318132‑M2/7‑149 (MQ=255)                                                                                                                                               tttggGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTcgcg                               >  4:356081‑M2/6‑123 (MQ=255)                                                                                                                                               tttggGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTcgcg                               <  3:356081‑M2/118‑1 (MQ=255)                                                                                                                                                   gGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCGGGCATCGTAGGGCGCGGCGATCACCtggt  <  6:404688‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TTGCAGGTGCACACCCAGGTCCTGTGCCGATTTAGCCAGGCGCGCCACCAGTGCCACACCGTTGACCAGGTGCATGGCCCGACCATGG‑CGGGCCAGGTGGTACAGGTGGCGGCCAAAGCGCTTGCACACGTGCAGCAGGGCTTTGGGCGAGCGGGTCATGTTGAGGAAGGCGGCAAGGTCGGCACCGGCCATGATCGGCATGCCCATGAACGAGGTTTCGCGCATGGTCTTGCGCAAGCGTGGCAGCAGGGCGCCAACCTCGCGGGCATCGTAGGGCGCGGCGATCACCTGGT  >  NC_002947/2973178‑2973470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.