New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3204236 =	56 (0.860)	3 (0.050)	3/254	NT	5.9%	coding (987/1422 nt)	PP_2810	hypothetical protein
	?	NC_002947	3204339 =	42 (0.670)					coding (1090/1422 nt)	PP_2810	hypothetical protein

GATCGGCAAGCAGGAGCTGCTGGTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGATTCCCGTTTAC  >  NC_002947/3204194‑3204482                                                                                                                                                  |                                                                                                                                                catgcgcttgggcgcctggtggcgcatgccttggcggacattGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATg                                                                                                                                              >  7:182436‑M1/43‑149 (MQ=255)      gCAAGCAGGAGCTGCTGGTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGc                                                                                                                                         >  3:6344/1‑149 (MQ=255)             ggAGCTGCTGGTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCa                                                                                                                                  >  2:157029/1‑149 (MQ=255)                    ctgGTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCAt                                                                                                                                 >  5:70759/1‑143 (MQ=255)                    ctgGTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCAt                                                                                                                                 <  6:70759/143‑1 (MQ=255)                    ctgGTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGcca                                                                                                                           >  8:71294/1‑149 (MQ=255)                       gTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGccac                                                                                                                          <  4:6344/147‑1 (MQ=255)                            ttACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGgcgc                                                                                                                   >  7:303139/1‑149 (MQ=255)                                aaCGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTTTGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCaa                                                                                                               <  8:341149/149‑1 (MQ=255)                                aaCGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGccc                                                                                                                 >  7:137145/1‑147 (MQ=255)                                aaCGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATAGCGTCTGGGTGGTCGAGGCCAATCTCCGCCAAGGCATGCGCCACCAGGCGccc                                                                                                                 >  3:103021/1‑147 (MQ=255)                                  cGATTTGGGGGCCTTCGACACCGCCGCCATGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCAGCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGAGCCCAAgc                                                                                                             <  8:303139/149‑1 (MQ=255)                                    aTTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAgcgc                                                                                                           <  2:261540/149‑1 (MQ=255)                                       cattggcctcgaccacccagacgcgatgcagctcatagcgacgcgactgcggcgcgatcgagtcgttgccggcgaacgcttctaccttggcggcggtgtcgtaggccAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATg                                                                                                        >  7:182436‑M2/108‑149 (MQ=255)                                            gcctcgaccacccagacgcgatgcagctcatagcgacgcgactgcggcgcgatcgagtcgttgccggcgaacgcttctaccttggcggcggtgtcgtaggccAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCt                                                                                                    >  8:85350‑M2/103‑148 (MQ=255)                                                  gACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCAGCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCCTGCGCCACCAGGCGCCCAAGCGCATGTTCTACATcga                                                                                             >  4:274792/1‑149 (MQ=255)                                                      ccgccgCCAAGGTAGAAGCGTTCTCCGGCAACGACTCGTTCTCGCCGCACTCGCGTCGCTATGAGCTGCATCTCGTCTGGGTGGTCGAGGCCAATGTCAGCCAATTCATGAGCGACCAGGCGCCCAAGGGCATGTTCTACATGTACGAg                                                                                         <  8:312342/149‑1 (MQ=255)                                                         ccgccAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGAc                                                                                      <  5:178920/149‑1 (MQ=255)                                                                ggTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTgg                                                                                >  3:304528/1‑148 (MQ=255)                                                                   aGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAgcg                                                                                                            <  1:225044/117‑1 (MQ=255)                                                                   aGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAgcg                                                                                                            >  2:225044/1‑117 (MQ=255)                                                                                 gcgactgcggcgcgatcgagtcgttgccggcgaacgcttctaccttggcggcggtgtcgtaggccAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTc                                                              <  7:85350‑M2/84‑1 (MQ=255)                                                                                 gCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTc                                                              <  7:71294/149‑1 (MQ=255)                                                                                 gCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTc                                                              >  8:94921/1‑149 (MQ=255)                                                                                   aaCGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAg                                                                                         >  4:323583/1‑120 (MQ=255)                                                                                   aaCGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAg                                                                                         <  3:323583/120‑1 (MQ=255)                                                                                   aaCGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGa                                                            >  1:308164/1‑149 (MQ=255)                                                                                       aCTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTc                                                        <  6:380610/149‑1 (MQ=255)                                                                                           gATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGGCGAGGCCAATGTCCGCCCAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGa                                                      <  5:241410/147‑1 (MQ=255)                                                                                                cggcgcAGTCGCGTCGCTATTTGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAAGCCg                                                                          <  8:202330/119‑1 (MQ=255)                                                                                                cgccgcAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGAcaagc                                                 >  4:309326/1‑147 (MQ=255)                                                                                                   cgcAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAggg                                            <  7:94921/149‑1 (MQ=255)                                                                                                            gtcgcTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAgc                                                                                                             <  1:260843/75‑1 (MQ=255)                                                                                                            gtcgcTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAgc                                                                                                             >  2:260843/1‑75 (MQ=255)                                                                                                                 tATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGt                              >  7:371976/1‑149 (MQ=255)                                                                                                                   tGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCATATCTGGAAGGTGc                            <  4:103021/149‑1 (MQ=255)                                                                                                                   tGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTg                             <  8:137145/148‑1 (MQ=255)                                                                                                                          cATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAgg                     <  2:308164/149‑1 (MQ=255)                                                                                                                          cATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAg                      <  8:134777/148‑1 (MQ=255)                                                                                                                            tCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGt                   >  2:133471/1‑149 (MQ=255)                                                                                                                            tCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGt                   >  5:110469/1‑149 (MQ=255)                                                                                                                               cgTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTtct                >  6:252722/1‑149 (MQ=255)                                                                                                                                  cTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGa             >  2:328860/1‑149 (MQ=255)                                                                                                                                     ggtggtCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGATTc          <  3:274792/149‑1 (MQ=255)                                                                                                                                     ggtggtCGAGGCCAATGTCCGCCAAGGCAAGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGAt            <  1:168071/147‑1 (MQ=255)                                                                                                                                       tggtCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGATTccc        <  3:309326/149‑1 (MQ=255)                                                                                                                                         gtCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTgg                                                                   >  3:41578/1‑88 (MQ=255)                                                                                                                                         gtCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTgg                                                                   <  4:41578/88‑1 (MQ=255)                                                                                                                                         gtCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGATTCCCGt      >  6:252815/1‑149 (MQ=255)                                                                                                                                             aggccAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTTGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGATTCCCGTTTAc  <  3:276535‑M2/144‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                GATCGGCAAGCAGGAGCTGCTGGTACCTTACAACGATTTCGGGGCCTACGACACCGCCGCCAAGGTAGAAGCGTTCGCCGGCAACGACTCGATCGCGCCGCAGTCGCGTCGCTATGAGCTGCATCGCGTCTGGGTGGTCGAGGCCAATGTCCGCCAAGGCATGCGCCACCAGGCGCCCAAGCGCATGTTCTACATCGACGAGGACAGCTGGAACCCGCTGCTGGCCGTCGACTTCGACAAGCAAGGGCAGATCTGGAAGGTGCGTGAAGGGTTCTCGATTCCCGTTTAC  >  NC_002947/3204194‑3204482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.