New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5114635	50 (0.770)	4 (0.060)	4/250	NT	7.8%	coding (313/666 nt)	yciO	maturation protein
	?	NC_002947	= 5114657	47 (0.760)					coding (291/666 nt)	yciO	maturation protein

AGCAAGGCCAGGGTGATGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGCTCGATTGCCGACTTGTCGCCTATCTGGCAACCCAGCGCATACG  >  NC_002947/5114514‑5114802                                                                                                                                                |                                                                                                                                                  aGCAAGGCCAGGGTGATGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGgtgcc                                                                                                                                              <  1:38061‑M2/149‑6 (MQ=255)  gCAAGGCCAGGGTGATGGCTTGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGgtgccg                                                                                                                                             >  5:339864‑M2/1‑143 (MQ=255)  gCAAGGCCAGGGTGATGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGgtgccg                                                                                                                                             <  3:285390‑M2/149‑7 (MQ=255)  gCAAGGCCAGGGTGATGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGgtgccg                                                                                                                                             <  7:146225‑M2/149‑7 (MQ=255)  gCAAGGCCAGGGTGATGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGgtgccg                                                                                                                                             >  2:38061‑M2/1‑143 (MQ=255)                aTGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGc                                                                                                                               <  4:285390/149‑1 (MQ=255)                 tGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCg                                                                                                                              <  3:391318/149‑1 (MQ=255)                 tGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCg                                                                                                                              <  5:204107/149‑1 (MQ=255)                     aTGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTAc                                                                                                                           >  5:195854/1‑148 (MQ=255)                      tGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACaa                                                                                                                         <  8:146225/149‑1 (MQ=255)                           cGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAAccc                                                                                                                      >  1:194683/1‑147 (MQ=255)                            ggTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAg                                                                                                                   <  6:119068/149‑1 (MQ=255)                              tACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGtt                                                                                                                 <  6:81068/149‑1 (MQ=255)                                        ccGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTc                                                                                                       >  2:274005/1‑149 (MQ=255)                                        ccGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTc                                                                                                       >  1:341684/1‑149 (MQ=255)                                          gATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGTCGGTGTCGACCTTGGc                                                                                                                               <  7:152083/123‑1 (MQ=255)                                          gATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGTCGGTGTCGACCTTGGc                                                                                                                               >  8:152083/1‑123 (MQ=255)                                            tGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCgcag                                                                                                   <  1:153899/149‑1 (MQ=255)                                                aCGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGa                                                                                                             <  3:358922/135‑1 (MQ=255)                                                aCGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGa                                                                                                             >  4:358922/1‑135 (MQ=255)                                                 cgccgcTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACAt                                                                                              >  5:123127/1‑149 (MQ=255)                                                 cgccgcTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGGGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCgcaactgg                                                                                               <  3:225180/148‑6 (MQ=255)                                                    cgcTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGACGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAg                                                                                           >  4:379013/1‑149 (MQ=255)                                                         aTCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTg                                                                                       >  3:139168/1‑148 (MQ=255)                                                          tCGTGCAACAGCACGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGaa                                                                                     <  7:11607/149‑1 (MQ=255)                                                            gTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGt                                                                                   >  1:241994/1‑149 (MQ=255)                                                             tGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGtt                                                                                  <  3:308319/149‑1 (MQ=255)                                                                aaCAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGGCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGtt                                                                                  <  6:175320/146‑1 (MQ=255)                                                                aaCAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGtt                                                                                  >  5:175320/1‑146 (MQ=255)                                                                aaCAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTtgtg                                                                               >  7:109968/1‑149 (MQ=255)                                                                aaCAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTtgtg                                                                               >  4:389174/1‑149 (MQ=255)                                                                aaCAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTtgtg                                                                               >  4:395498/1‑149 (MQ=255)                                                                 aCAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGc                                                                              >  8:92023/1‑149 (MQ=255)                                                                    gcagGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCTACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTc                                                                           <  8:333242/149‑1 (MQ=255)                                                                        gcgcGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAgg                                                                                          <  4:356204/130‑1 (MQ=255)                                                                        gcgcGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAgg                                                                                          >  3:356204/1‑130 (MQ=255)                                                                        gcgcGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGt                                                                       <  8:109968/149‑1 (MQ=255)                                                                         cgcgGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGTAGCACATCAGGGTGAAGTTGTGCGTCTTGTc                                                                      <  1:42229/149‑1 (MQ=255)                                                                         cgcgGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTc                                                                      <  6:123127/149‑1 (MQ=255)                                                                          gcgGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTcc                                                                     <  2:194683/149‑1 (MQ=255)                                                                                                  ggATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGc                                             <  4:186158/149‑1 (MQ=255)                                                                                                     tGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGCTCg                                          <  4:362424/149‑1 (MQ=255)                                                                                                      gAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGaa                                                                                     >  6:16717/1‑105 (MQ=255)                                                                                                      gAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGaa                                                                                     <  5:16717/105‑1 (MQ=255)                                                                                                      gAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGCTCGa                                         >  8:159200/1‑149 (MQ=255)                                                                                                         ggTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCACGCGCCGCACCCGCTCGATTg                                      >  6:22971/1‑149 (MQ=255)                                                                                                             tAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGcgccgc                                                   <  3:373693/132‑1 (MQ=255)                                                                                                             tAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGcgccgc                                                   >  4:373693/1‑132 (MQ=255)                                                                                                                  ccccGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGCTCGATTGCCGACTTGt                             >  7:90068/1‑149 (MQ=255)                                                                                                                   cccGGCACATGCGCCTTCAGCAAGCGGAAGgtgccggggccttacaccttcatcctcaacggcacgcgtgaagtgccgcgcctgctgttgcacgataagcggcgtacaatcgggctgcgtgtaccggaccatgccatcaccctggcctt                            <  3:190268‑M2/149‑120 (MQ=255)                                                                                                                    ccGGCACATGCGCCTTCAGCAAGCGGAAGgtgccggggccttacaccttcatcctcaacggcacgcgtgaagtgccgcgcctgctgttgcacgataagcggcgtaccatcgggctgcgtgtaccggaccat                                             <  5:270423‑M2/131‑103 (MQ=255)                                                                                                                    ccGGCACATGCGCCTTCAGCAAGCGGAAGgtgccggggccttacaccttcatcctcaacggcacgcgtgaagtgccgcgcctgctgttgcacgataagcggcgtaccatcgggctgcgtgtaccggaccat                                             >  6:270423‑M2/1‑29 (MQ=255)                                                                                                                                      gCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCcgc                                                              >  3:232623/1‑96 (MQ=255)                                                                                                                                      gCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCcgc                                                              <  4:232623/96‑1 (MQ=255)                                                                                                                                       cAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGCTCGATTGCCGACTTGTCGCCTATCTGGCAACCCAgcg        <  7:159200/149‑1 (MQ=255)                                                                                                                                          gCGGAAGgtgccggggccttacaccttcatcctcaacggcacgcgtgaagtgccgcgcctgctgttgcacgataagcggcgtaccatcgggctgcgtgtaccggaccatgccatcaccctggccttgctggccgagttgggcgagccac     >  4:190268‑M2/1‑7 (MQ=255)                                                                                                                                             gAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGCTCGATTGCCGACTTGTCGCCTATCTGGCAACCCAGCGCATACg  >  2:299865/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  AGCAAGGCCAGGGTGATGGCATGGTCCGGTACACGCAGCCCGATGGTACGCCGCTTATCGTGCAACAGCAGGCGCGGCACTTCACGCGTGCCGTTGAGGATGAAGGTGTAAGGCCCCGGCACATGCGCCTTCAGCAAGCGGAAGGTGCCGGTGTCGACCTTGGCGTACAACCCCAGTTGCGACATGTCGCAGCACATCAGGGTGAAGTTGTGCGTCTTGTCCAGCCCGCGCAGGCGCCGCACCCGCTCGATTGCCGACTTGTCGCCTATCTGGCAACCCAGCGCATACG  >  NC_002947/5114514‑5114802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.