New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5537031 =	23 (0.350)	3 (0.060)	4/210	NT	18.0%	intergenic (+8/+95)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin
	?	NC_002947	5537107 =	9 (0.170)					intergenic (+84/+19)	nadE/PP_4870	NH(3)‑dependent NAD(+) synthetase/azurin

TCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTTCTCAGGCG  >  NC_002947/5536968‑5537250                                                                                                                                            |                                                                                                                                                 tcgtcgCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTc                                                                                                                                         >  4:258612/1‑149 (MQ=255)                                                gCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGAtgt                                                                                         <  3:258612/149‑1 (MQ=255)                                                                       GAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                                                  <  6:415192‑M1/149‑1 (MQ=255)                                                                           GGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                                                               <  6:268208‑M1/148‑1 (MQ=255)                                                                            GGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTg                                                               <  2:181798‑M1/147‑1 (MQ=255)                                                                             GTTCACCCTCGTATTCGCGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAg                                                            <  3:219599‑M1/149‑1 (MQ=255)                                                                             GTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAg                                                            <  2:121873‑M1/149‑1 (MQ=255)                                                                                CACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTca                                                         <  8:143500‑M1/149‑1 (MQ=255)                                                                                 ACCCGCGAATGCGTCGGTGGGTTCACCCTCGTATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcac                                                        <  8:335937‑M1/149‑1 (MQ=255)                                                                                  CCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCATTCATCGAGATGTGGCCCGGGAAGGTGCag                                                                        >  1:31538‑M1/1‑133 (MQ=255)                                                                                  CCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCag                                                                        <  2:31538‑M1/132‑1 (MQ=255)                                                                                   ccgcgaatgcgtcggtgggttcaccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacca                                                      >  8:230964‑M2/58‑149 (MQ=255)                                                                                   CCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTcacca                                                      <  7:267709‑M1/149‑1 (MQ=255)                                                                                     gcgaatgcgtcggtgggttcaccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                                                  >  6:3988‑M2/56‑135 (MQ=255)                                                                                     gcgaatgcgtcggtgggttcaccctcgtattcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGaagaag                                                                  <  5:3988‑M2/80‑1 (MQ=255)                                                                                         ATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCgg                                                  >  5:268208‑M1/1‑147 (MQ=255)                                                                                                  tGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTg                                       >  4:322369/1‑149 (MQ=255)                                                                                                       ccgccGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgt                                  >  6:178995/4‑149 (MQ=255)                                                                                                       ccACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgt                                  <  1:181798/149‑1 (MQ=255)                                                                                                        cACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgtg                                 >  5:401399/1‑149 (MQ=255)                                                                                                         aCCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAgtgt                                >  1:169647/1‑149 (MQ=255)                                                                                                           cGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGaa                                    >  2:43279/1‑143 (MQ=255)                                                                                                           cGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGaa                                    <  1:43279/143‑1 (MQ=255)                                                                                                             aCGCATTCGCGGGTTAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGaa                            <  7:67917/149‑1 (MQ=255)                                                                                                               gCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAact                          >  5:196939/1‑149 (MQ=255)                                                                                                                   tcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTccaag                                          >  7:76179‑M2/26‑127 (MQ=255)                                                                                                                   tcgcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTccaag                                          <  8:76179‑M2/104‑3 (MQ=255)                                                                                                                     gcgggtgaacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAacttcactt                    <  7:143500‑M2/126‑1 (MQ=255)                                                                                                                            aacccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGtttc             <  7:230964‑M2/133‑1 (MQ=255)                                                                                                                              cccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGaa                                    <  6:293717‑M2/110‑1 (MQ=255)                                                                                                                              cccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGaa                                    >  5:293717‑M2/15‑124 (MQ=255)                                                                                                                              cccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGtttctt           >  1:401335‑M2/15‑149 (MQ=255)                                                                                                                               ccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGtttcttt          <  2:401335‑M2/136‑1 (MQ=255)                                                                                                                               ccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGtttcttt          <  2:169647‑M2/136‑1 (MQ=255)                                                                                                                               ccgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGtttctt           >  2:64813‑M2/14‑148 (MQ=255)                                                                                                                                cgctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGtttctttc         <  6:401399‑M2/137‑1 (MQ=255)                                                                                                                                 gctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTttctttct        >  6:141132‑M2/12‑149 (MQ=255)                                                                                                                                  ctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTttctttct        >  3:186873‑M2/11‑148 (MQ=255)                                                                                                                                  ctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTtctc       <  1:64813‑M2/139‑1 (MQ=255)                                                                                                                                  ctcctgcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTtctc       <  1:121873‑M2/139‑1 (MQ=255)                                                                                                                                       gcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTTCTCAGgcg  >  8:356735‑M2/6‑149 (MQ=255)                                                                                                                                       gcaggGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCACAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTTCTCAGgcg  >  6:34010‑M2/6‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                 TCGTCGCCACCTACCGCAAGACCCAGCACAAGCGCGAACTGCCGTTCGCTCCTTGATAAGTGGCCTGCAGGAGCGGGTTCACCCGCGAATACGAGGGTGAACCCACCGACGCATTCGCGGGTGAACCCGCTCCTGCAGGGTTCGCCGTCAGCCTTTGATTACTTGACGATGACCTTGCCTTTCAT‑CATCGAGATGTGGCCCGGGAAGGTGCAGAAGAAGCTGTAGTCACCACCGGCTTCCAGCTTGGAAGTGTCGAACTTCACTTCGGTTTCTTTCTCAGGCG  >  NC_002947/5536968‑5537250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.