New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5698727 =	56 (0.860)	4 (0.070)	4/230	NT	9.8%	intergenic (+17/‑150)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein
	?	NC_002947	5698810 =	25 (0.440)					intergenic (+100/‑67)	hslU/PP_5002	protease HslVU ATPase subunit/hypothetical protein

CTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTACC  >  NC_002947/5698663‑5698958                                                                                                                                                       |                                                                                                                                                       cTGGGTCAGCTGGCAAATAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGCCAAGCCCGCT‑‑‑CCTGCACGCGCCACCAAAACCCTTGGGCGTGTGGTTATCCGGGGGGGGGCGGGCTTGCCCGCGAaga                                                                                                                                                       <  6:7036/149‑1 (MQ=255)        aGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCtt                                                                                                                                                <  2:298977/149‑1 (MQ=255)          cTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCCAGCCCGCG‑‑‑CCAGCACCCGCCCCCCCAACCCATTGGGCAGTGGGGATACGTGAGGGGGGCGGGGTGCCCGCCAAGAAGcccatt                                                                                                                                               >  8:121249/1‑145 (MQ=255)           tGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCCAGCCCCCA‑‑‑CCAGCACCCGCCACCCCAACCCATGGGGCGGTGGTGTTACGGGGGGGGGCGGGGGTTGCCGCGGAGAGGgccgtta                                                                                                                                              >  6:80463/1‑144 (MQ=255)               acaGAAAGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCCAGCCCCCG‑‑‑CCAGCACACCCCCCCCCAAACCAATGGCCAGTGGGGCAACGGGGCGGGGCCGGCATGGCCCCGCACAGGCCCATGaaaca                                                                                                                                          >  6:317700/1‑145 (MQ=255)                         gACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTCTCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATaa                                                                                                                               <  1:310578/149‑1 (MQ=255)                                 gcgTTACATTCTGTAAGACCGTTTTCGACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGaa                                                                                                                        <  5:180213/148‑1 (MQ=255)                                       cATTCTTTAAGACCGGTTTCTACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCAAAACCCTTGGGCCTGTGGTGATCCGGGGGGGGGGGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGc                                                                                                                 <  7:56109/149‑1 (MQ=255)                                        aTTCTGTAAGACCGGTTTCGCCATTTTCGCGGGCAAGCCCGCTCTCCCTGCCCGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAaga                                                                                                                                                       <  1:121180/113‑1 (MQ=37)                                              tAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTTATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtca                                                                                                             <  5:356062/146‑1 (MQ=255)                                                  aCCGGTTTCGACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTc                                                                                                     <  7:102536/149‑1 (MQ=255)                                                            aCAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑tt                                                                                          <  5:80463/149‑1 (MQ=255)                                                                   CGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCa                                                                                   <  1:317660‑M1/149‑1 (MQ=255)                                                                    GCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGGGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCa                                                                                   >  5:317700‑M1/1‑148 (MQ=255)                                                                      GGGCAAGCCCGCT‑‑‑CCGGCACGCGCCACCACAACCCTTGGGCCTGTGGTTATCCGGGGGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATgg                                                                                >  8:149611‑M1/1‑149 (MQ=255)                                                                          AAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCg                                                                            <  4:67730‑M1/149‑1 (MQ=255)                                                                             CCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGCTCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCgcct                                                                         <  5:102541‑M1/149‑1 (MQ=255)                                                                                cccgcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCgcct                                                                         >  8:27775‑M2/72‑149 (MQ=255)                                                                                  t‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCCAACAGGCCCTTGAAACCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTa                                                                    >  4:179588/1‑149 (MQ=255)                                                                                   gcccccgcacggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCgcctgcc                                                                      >  1:169951‑M2/69‑149 (MQ=255)                                                                                       cTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTAcc                                                                  >  2:281717/1‑149 (MQ=255)                                                                                        tGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCg                                                                 >  4:339161/1‑149 (MQ=255)                                                                                         gCACGCCCCACCACAACCCTTGGGCCTGTGGTGATCCGGGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCCCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGc                                                                <  3:399642/149‑1 (MQ=255)                                                                                           acggatcaccaccggcccaagggttgtggtggcgggtgcaggagcgggcttgcccgcgaaGCGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCATACAGCTCCCGAGAGA‑TTCTGCCCATGGCCCgcctg                                                                        <  1:60377‑M2/80‑1 (MQ=255)                                                                                           acggatcaccacaggcccaagggttgtggtggcgcgtgcaggagcgggcttgcccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCgcctg                                                                        >  2:60377‑M2/61‑139 (MQ=255)                                                                                           aCGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGcc                                                               >  2:400936/1‑148 (MQ=255)                                                                                              cggctccacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATc                                                            <  1:146946/143‑1 (MQ=255)                                                                                              cgcCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGGGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCa                                                           <  7:242296/149‑1 (MQ=255)                                                                                                 caccacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtc                                                                                                              <  6:401803/97‑1 (MQ=255)                                                                                                 caccacAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTtc                                                                                                              >  5:401803/1‑97 (MQ=255)                                                                                                         cccTGGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACaaa                                                <  3:96680/149‑1 (MQ=255)                                                                                                          ccTTGGGCCTGTGGTGTTCCGTGCGGGGGGGGGGTTGCCCGCGAATAGGGCCATGAATCCCTCCCCCATAACCTTGAAGCTGTTCTTCAT‑CATCTCCCGAGAGATTTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACaaa                                                <  1:281717/149‑1 (MQ=255)                                                                                                           cTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGc                                              >  5:350435/1‑149 (MQ=255)                                                                                                           cTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑AAGCTCACGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGc                                              >  7:25291/1‑149 (MQ=255)                                                                                                                         gATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTc                                           <  6:164915/138‑1 (MQ=255)                                                                                                                         gATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTc                                           >  5:164915/1‑138 (MQ=255)                                                                                                                                 cGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCAcc                        >  5:201855/1‑149 (MQ=255)                                                                                                                                               cccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCg           <  7:121249‑M2/140‑1 (MQ=255)                                                                                                                                               cccgcgaaGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGa          <  3:67730‑M2/141‑1 (MQ=255)                                                                                                                                                       gagGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTacc  <  1:400936/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                       CTGGGTGAGCTGGCACAGAACGAAGACCTGTCGCGTTACATTCTGTAAGACCGGTTTCGACAGTTTCGCGGGCAAGCCCGCT‑‑‑CCTGCACGCGCCACCACAACCCTTGGGCCTGTGGTGATCCGTGCGGGGGCGGGCTTGCCCGCGAAGAGGCCCTTGAATCCCTCCCCCATAAGCTGGAAGCTGTGCTTCAT‑CAGCTCCCGAGAGA‑TTCTGCCCATGGCCCGCCTGCCTACCGCCATCAACCTGCACAAAGCCTCCAAGACCCTCAGCCTCACCTACGCACCCGGCGAGGTCTACC  >  NC_002947/5698663‑5698958

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.