New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5924551 | 51 (0.780) | 3 (0.060) | 3/214 | NT | 7.4% | intergenic (‑121/+76) | gcvP‑II/gcvH‑II | glycine dehydrogenase/glycine cleavage system protein H |
? | NC_002947 | = 5924587 | 34 (0.650) | intergenic (‑157/+40) | gcvP‑II/gcvH‑II | glycine dehydrogenase/glycine cleavage system protein H |
CTTCCTAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAACCGTAAGGCTCTTCG > NC_002947/5924442‑5924732 | ctTCCTAGACAAGGCCTAATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGATGGGAAACTTGTTTGCAGGCCCGGCCTCTTAGCGGCTAAAGCAGCTCCTAAAGGGGATTCACCCGTATCGAATGCAGTGCTGTAACTGtg < 6:98099‑M2/148‑3 (MQ=255) ttCCTAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtg > 3:256461‑M2/1‑145 (MQ=255) ccTAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGGTGTACCTGtgtagg < 4:370469‑M2/149‑7 (MQ=255) ccTAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgta > 7:147788‑M2/1‑143 (MQ=255) cTAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtagga > 3:70893‑M2/1‑142 (MQ=255) tAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTATCGAATGCAGTGCTGTACCTGtgtaggag < 3:278793‑M2/149‑9 (MQ=255) tAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCCCACATACAGGGGCTGCACCCGTCACGAATGCAGTGCTGTAACTGtgtaggag < 7:163038‑M2/149‑9 (MQ=255) ccAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggc < 8:202802‑M2/149‑13 (MQ=255) cAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtagga < 4:213404‑M2/143‑8 (MQ=255) cAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtagga > 3:213404‑M2/1‑136 (MQ=255) gCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggcttta > 5:171013‑M2/1‑133 (MQ=255) gCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggctt < 7:307286‑M2/147‑15 (MQ=255) ccTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggctttag > 4:194931‑M2/1‑132 (MQ=255) tCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCGACAGGGGCTGCCCCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggctttatcc < 2:224004‑M2/149‑20 (MQ=255) gAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggctttagccgcgaa > 4:278793‑M2/1‑125 (MQ=255) gAAACTTACAAGTCTAGGAAGGGATTGCCGATGGTGCGGGGAACCTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAACGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtagtagcggctttagccgcgaa > 2:282501‑M2/1‑125 (MQ=255) ttACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGaagcaag > 4:117587/1‑149 (MQ=255) tAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAACCCCCACCAAAATGGGCGTGACCCGTATCGAATGGAGTGGTGTAACTGTGTAGTCCCGGCTTTAGACGCGAAGCCAGCAAAGCCGt > 1:162682/1‑149 (MQ=255) gAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCt > 5:183804/1‑148 (MQ=255) ccGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAACGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATCCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAAt < 3:76987/149‑1 (MQ=255) ccGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAAt < 6:183804/149‑1 (MQ=255) cGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTATGAGCGGCTTTAGCCGCGaagcaag > 7:163047/1‑126 (MQ=255) gCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGGCCCCGTCTCGAATGCAGTGCTGTTCCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAAAGCGGGGTTACTCGCCAATCAGCGCCt > 1:353175/1‑149 (MQ=38) cGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCACCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTg > 6:126261/1‑149 (MQ=255) gggAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAAAGCACTGCTGTACCTGTGGAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGACTTACTCGCCAATCAGCGCCTgg > 7:78716/1‑148 (MQ=255) aGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCAACAGGGGCGGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCa < 1:224004/149‑1 (MQ=255) gCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGc < 3:117587/149‑1 (MQ=255) cggctgattCGCGGCAAAACCCGCTCCACCCGGGCGTCCACCCGTCTCGAATGCAGTGCTGTACCTGTGTTGTAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAAc < 8:353020/142‑1 (MQ=255) cgcgGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTa > 5:94307/1‑121 (MQ=255) cgcgGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTa < 6:94307/121‑1 (MQ=255) gcgGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCt > 3:61670/1‑149 (MQ=255) gCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCgg > 2:311827/1‑149 (MQ=255) cTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTagccagcc > 1:375172/1‑123 (MQ=255) cTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGAAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTagccagcc < 2:375172/123‑1 (MQ=255) tAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGcc > 3:284369/1‑149 (MQ=255) aaaGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTagccagcc < 4:17768/121‑1 (MQ=255) aaGCCGCTCCTACAGGGGCTGAACCCGTCTCTATTGCTGTGCTGTACCTGTGTAGGAGGGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCgg < 8:163038/149‑1 (MQ=255) gCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGt > 3:161097/1‑149 (MQ=255) gCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggctttagccgcgaagaggccgggcctgcaaacaagtttccccgcacaatcggcaatcccttcctagacttgtaagtttccatgaggcctggtc < 6:356520‑M2/148‑104 (MQ=255) gCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGc > 7:231588/1‑149 (MQ=255) tCCTACAGGGGCTGCACCCGTCTCCAATGCAGTGCTGTACCTGtgtaggagcggctttagccgcgaacaggccgggcctgcaaacaagtttccccgcacaatcggcaatcccttcctagacttgtaagtttcgatgaggcctcgtctag < 8:114216‑M2/149‑107 (MQ=255) cTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCtt < 7:202802/147‑1 (MQ=255) gCTGCACCCGTCTCGAATGCAGTGCTGTACCTGtgtaggagcggctttagccgcgaagaggccgggcctgcaaacaagtttccccgcacaatcggcaatcccttcctagacttgtaagtttccatgaggcctggtctaggaagagagcg > 5:356520‑M2/1‑33 (MQ=255) gCACCCGTCTCGAAGGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGa < 5:126261/149‑1 (MQ=255) cACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTg < 8:307286/147‑1 (MQ=255) cACCCGCCTCCAATGCAGTGCTGTACCTGTGAAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGaa < 1:245514/149‑1 (MQ=255) cGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGa < 6:26922/144‑1 (MQ=255) cGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGa > 5:26922/1‑144 (MQ=255) gTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATcc < 2:224913/149‑1 (MQ=255) gAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGaa > 4:50214/1‑149 (MQ=255) gAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGaa > 8:111134/1‑149 (MQ=255) gAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGaa > 6:189678/1‑149 (MQ=255) gAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTCACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGaa > 7:94011/1‑149 (MQ=255) acggctgTGCGGTACCTGTGTCGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAAc < 8:78716/143‑1 (MQ=255) tACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAACCGTAAGGCTCtt > 4:233793/1‑149 (MQ=255) ccTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAACCGTAAGGCTCTTCg > 2:238439/1‑149 (MQ=255) ccTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAACCGTAAGGCTCTTCg < 7:111134/149‑1 (MQ=255) cTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAACCGTAAGGctct > 7:195101/1‑145 (MQ=255) cTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAACCGTAAGGctct < 8:195101/145‑1 (MQ=255) | CTTCCTAGACCAGGCCTCATGGAAACTTACAAGTCTAGGAAGGGATTGCCGATTGTGCGGGGAAACTTGTTTGCAGGCCCGGCCTCTTCGCGGCTAAAGCCGCTCCTACAGGGGCTGCACCCGTCTCGAATGCAGTGCTGTACCTGTGTAGGAGCGGCTTTAGCCGCGAAGCAAGCAACGCGGTCTTACTCGCCAATCAGCGCCTGGTAGCCAGCCGCATCCAGCAACTTGTCCAGCTCGGCCGGGTTGCTTGGCTTCAATTTGAAGATCCACGAACCGTAAGGCTCTTCG > NC_002947/5924442‑5924732 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |