New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5943601 =	47 (0.720)	3 (0.060)	3/220	NT	8.9%	intergenic (+9/+76)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein
	?	NC_002947	5943666 =	22 (0.410)					intergenic (+74/+11)	PP_5210/PP_5211	alcohol dehydrogenase/ChaC‑related protein

GCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATAACGCCCCTTGGCACTGGCCA  >  NC_002947/5943518‑5943813                                                                                                                                                     |                                                                                                                                                    gCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCgg                                                                                                                                                     <  6:222129/149‑1 (MQ=255)   aGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTATTAGCGGGTAAACCCCCTCCTACACGCGCCCGTGCAGGGTTTAACCCCGAAGAGGCCCGa                                                                                                                                                    >  4:186296/1‑148 (MQ=255)       gCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAgg                                                                                                                                               <  3:186296/149‑1 (MQ=255)                  tATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCgg                                                                                                                                                     >  6:364645/1‑132 (MQ=255)                  tATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGCTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCgg                                                                                                                                                     <  5:364645/132‑1 (MQ=255)                           gCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTcgcg                                                                                                                               >  7:18434/1‑145 (MQ=255)                                ggCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATtgtg                                                                                                                      <  2:13450/149‑1 (MQ=255)                                ggCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATtgtg                                                                                                                      <  7:229307/149‑1 (MQ=255)                                 gCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTgg                                                                                                                     <  8:18434/149‑1 (MQ=255)                                  cAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGc                                                                                                                    <  3:345600/149‑1 (MQ=255)                                                     aGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTc                                                                                                 <  1:58690/149‑1 (MQ=255)                                                      gTTGGTGGGGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTcc                                                                                                <  7:192874/149‑1 (MQ=255)                                                         ggtggtGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATtg                                                                                                                        >  1:52026/1‑122 (MQ=255)                                                         ggtggtGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATtg                                                                                                                        <  2:52026/122‑1 (MQ=255)                                                                  ggCCAGGTACGGCTTTAGGGGCCGCTTCGCGGGTAAACCCGCTCCTACCGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCg                                                                                    <  3:11689/149‑1 (MQ=38)                                                                        gTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTc                                                                                                                                  <  7:364170/97‑1 (MQ=255)                                                                        gTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATc                                                                              >  5:208180/1‑149 (MQ=255)                                                                        gTAAGGCAGTAGCGGCCTCTTAGCGGGTAAACCCGCTCCAACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTTCGCACACtta                                                                                                                                  >  8:364170/1‑96 (MQ=37)                                                                        gTAAGGCAGTAGCGGCCTCTTAGCGGGTAAACCCCGTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGGTGGGCACACTTAGCGCACATTGTGGCAACCCCTGAATCGCGCGTGCAGGTTGCGGTCGGGCATc                                                                              >  4:265573/1‑149 (MQ=37)                                                                                 tAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTg                                                                     >  4:314568/1‑149 (MQ=255)                                                                                   gCGGCCTCATAGCGGGTAAACCCGCTCCAACAGGCGGCCGGGCAGGGTTTACCCGCGAAGAGGCCGGAACACGTTGCTCACACTTACCGCAGATTGTGGCAACGCCGGAATCCCGCTTCCAGGTTGCGAGCGGGCATGTGGTGACAgcg                                                                   >  8:164695/1‑149 (MQ=255)                                                                                         TCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTg                                                              <  2:253584‑M1/148‑1 (MQ=255)                                                                                          CTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCa                                                            <  5:387203‑M1/149‑1 (MQ=255)                                                                                           ttcgcgggtaaaccctgcacggtcgcctgtaggagcgggtttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTgcgc                                                                  <  2:152062‑M2/84‑1 (MQ=255)                                                                                           ttcgcgggtaaaccctgcacggtcgcctgtaggagcgggtttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTgcgc                                                                  >  1:152062‑M2/59‑142 (MQ=255)                                                                                            TCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCAtt                                                          <  5:8892‑M1/149‑1 (MQ=255)                                                                                              GCGGGTAAACCCGGTCCTAAAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGACGGAACAGGTTGCTCACACTTCGCTCAGATTGTGGCAACGCCTGAAGCGCGCTTCAACGTGGCTATCTGGCATCTCGTGAATGCGCAGtgcaatc                                                         <  3:38362‑M1/148‑4 (MQ=255)                                                                                              GCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTATCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTgg                                                                           <  7:81573‑M1/130‑1 (MQ=255)                                                                                              GCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTATCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTgg                                                                           >  8:81573‑M1/1‑130 (MQ=255)                                                                                               cgggtaaaccctgcacggtcgcctgtaggagcgggtttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTc                                                         >  2:67479‑M2/55‑147 (MQ=255)                                                                                                GGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAg                                                      >  5:74688‑M1/1‑149 (MQ=255)                                                                                                 GGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAgg                                                                                                                                               >  1:161895‑M1/1‑59 (MQ=255)                                                                                                 GGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAgg                                                                                                                                               <  2:161895‑M1/59‑1 (MQ=255)                                                                                                 GGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAgg                                                     <  5:389822‑M1/149‑1 (MQ=255)                                                                                                  GTAAACCCGCTCCTACAGGCGACCGTGCAGGTTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGt                                                    >  1:253584‑M1/1‑149 (MQ=255)                                                                                                        CCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAg                                                      <  6:381142‑M1/141‑1 (MQ=255)                                                                                                        CCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAg                                                      >  5:381142‑M1/1‑141 (MQ=255)                                                                                                        CCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTc                                              <  3:216732‑M1/149‑1 (MQ=255)                                                                                                        CCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTc                                              <  7:300874‑M1/149‑1 (MQ=255)                                                                                                          gCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGa                                            <  3:265573/149‑1 (MQ=255)                                                                                                          gCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGa                                            <  6:208180/149‑1 (MQ=255)                                                                                                                 cAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTc                                     >  8:57931/1‑149 (MQ=255)                                                                                                                 cAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTc                                     <  7:164695/149‑1 (MQ=255)                                                                                                                  aGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTcc                                    >  2:385912/1‑149 (MQ=255)                                                                                                                            gCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGc                          >  7:358566/1‑149 (MQ=255)                                                                                                                               gggtttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCcgc                                 <  2:233748‑M2/117‑1 (MQ=255)                                                                                                                               gggtttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCcgc                                 >  1:233748‑M2/23‑139 (MQ=255)                                                                                                                                 gtttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATaa                     <  2:226765‑M2/129‑1 (MQ=255)                                                                                                                                  tttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTccc                                   <  7:279498‑M2/115‑1 (MQ=255)                                                                                                                                  tttacccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTccc                                   >  8:279498‑M2/20‑134 (MQ=255)                                                                                                                                       ccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATAACGcccc               >  2:84324‑M2/15‑149 (MQ=255)                                                                                                                                       ccgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATAGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATAACGcccc               >  2:90103‑M2/15‑149 (MQ=255)                                                                                                                                        cgcgaagaggccgGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATAACGCCCCt              >  3:377762‑M2/14‑149 (MQ=255)                                                                                                                                                 gccgGAACAGGTTGCTGACTCTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCGAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATAACGCCCCTTGGCACTg      <  4:38362‑M2/144‑1 (MQ=255)                                                                                                                                                    gGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATAACGCCCCTTGGCACTGGCCa  <  3:314568‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCAGAAGCCGGGGTTGCTATCGAGAAGCTGGGGCAACGGCAGGCTGTGGGTAAGTTGGTGGTGCTGGCCAGGTAAGGCAGTAGCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGCGACCGTGCAGGGTTTACCCGCGAAGAGGCCGGAACAGGTTGCTCACACTTCGCGCAGATTGTGGCAACGCCTGAATCGCGCTTCCAGGTTGCGATCGGGCATCTGGTGACTGCGCAGTGCATTCAAGGTCTGCTCGACATACTCCCGCGTGGTGCCATAACGCCCCTTGGCACTGGCCA  >  NC_002947/5943518‑5943813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.