New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 401301	NA (NA)	3 (0.060)	3/246	NT	7.3%	coding (887/1059 nt)	PP_0334	transposase
	?	NC_002947	401364 =	40 (0.740)					coding (950/1059 nt)	PP_0334	transposase

ATTCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCcgatcag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401154‑401301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCT  >  NC_002947/401364‑401516                                                                                                                                                                                                                                                                                                               ATTCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCC                                                                                                                                                          >  8:16955/1‑149  TTCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCG                                                                                                                                                         <  5:297869/149‑1  TTCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCC                                                                                                                                                          >  6:99449/1‑148   TCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGTAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGGTAAGGCCTGATTCCGA                                                                                                                                                        >  5:243117/1‑149    CCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGAT                                                                                                                                                       >  8:50090/1‑149    CCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGA                                                                                                                                                        <  5:209429/148‑1    CCGCCTTCTTCGATATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGAT                                                                                                                                                       >  3:291980/1‑149    CCGCCTGCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAATCAAAATCAGATTGGGCTAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGA                                                                                                                                                        <  5:157954/148‑1     CGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGTGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGGTTCCGAT                                                                                                                                                       <  3:143991/148‑1       CCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAG                                                                                                                                                    >  5:86455/1‑149                                                                               GTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCA                                                                                                 >  3:107917/1‑128                                                                               GTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCA                                                                                                 <  4:107917/128‑1                                                                                         CATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCG                                                                  <  2:127395/149‑1                                                                                                                                                      GATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACC     <  4:286978/149‑1                                                                                                                                                      GATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGC            <  4:6129/142‑1                                                                                                                                                      GATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGC            >  3:6129/1‑142                                                                                                                                                          AGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCT  <  7:78260/148‑1                                                                                                                                                           GGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGT                                   <  4:337003/114‑1                                                                                                                                                           GGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGT                                   >  3:337003/1‑114                                                                                                                                                                                                                                                                                                               ATTCCGCCTTCTTCGGTATCGTGCCCGATCAGCACAGCAGCGGAAACAAAATCAGATTGGGCAAGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCcgatcag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/401154‑401301 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAACCCCT  >  NC_002947/401364‑401516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.