| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 401301 | NA (NA) | 3 (0.060) | 3/246 | NT | 7.3% | coding (887/1059 nt) | PP_0334 | transposase |
| ? | NC_002947 | 401364 = | 40 (0.740) | coding (950/1059 nt) | PP_0334 | transposase | |||||
AGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTC > NC_002947/401217‑401508 | attccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcc > 8:16955‑M2/149‑149 (MQ=255) ttccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcc > 6:99449‑M2/148‑148 (MQ=255) ttccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCg < 5:297869‑M2/2‑1 (MQ=255) tccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggtaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccaggtaaggcctgattcCGa > 5:243117‑M2/147‑149 (MQ=255) ccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGa < 5:209429‑M2/3‑1 (MQ=255) ccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGAt > 8:50090‑M2/146‑149 (MQ=255) ccgccttcttcgatatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGAt > 3:291980‑M2/146‑149 (MQ=255) ccgcctgcttcggtatcgtgcccgatcagcacagcagcggaatcaaaatcagattgggctagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGa < 5:157954‑M2/3‑1 (MQ=255) cgccttcttcggtatcgtgcccgatcagcacagcagtggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctggttcCGAt < 3:143991‑M2/4‑1 (MQ=255) atagccgcctccggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccagataatccgcagattcCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCa > 3:181484‑M1/82‑149 (MQ=255) ccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGATCAg > 5:86455‑M2/143‑149 (MQ=255) ggtttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATc > 2:197929‑M1/70‑149 (MQ=255) tttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTaa < 6:129670‑M1/78‑1 (MQ=255) tttttcgttcggtttgcgttggtaaacctgatcgctctgtaacagggcccatataatccgcagatttCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTaa > 5:129670‑M1/68‑145 (MQ=255) gatgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTggg > 6:73426/1‑149 (MQ=32) gatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGccc > 5:26950/1‑149 (MQ=32) tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCACGCCTTGGGCGCAAGGAGGCGGAGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTg > 4:84829/1‑149 (MQ=17) ccAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGt > 7:301413/1‑149 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTa < 5:73426/149‑1 (MQ=32) atcgctctgtaacagggcccatataatccgcagatttCGATTAGCCAGCCTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAggcggc > 6:231631‑M1/38‑101 (MQ=255) atcgctctgtaacagggcccatataatccgcagatttCGATTAGCCAGCCTGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAggcggc < 5:231631‑M1/64‑1 (MQ=255) gcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGc > 5:202172/1‑148 (MQ=32) cATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGa > 7:191756/1‑149 (MQ=32) gTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTTGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGt < 3:84829/149‑1 (MQ=17) ttGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTa > 8:78260/1‑149 (MQ=32) gAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGttt < 6:26950/146‑1 (MQ=32) gAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTAc < 6:139517/148‑1 (MQ=32) ccAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc > 8:204233/1‑149 (MQ=32) gCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGc > 2:184066/1‑148 (MQ=32) tAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaaa > 8:237144/1‑149 (MQ=32) aGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAAcc < 6:202172/149‑1 (MQ=32) ccTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCGAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaa > 3:210099/1‑149 (MQ=17) gtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCa > 3:107917‑M2/71‑128 (MQ=255) gtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCa < 4:107917‑M2/58‑1 (MQ=255) cTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCGTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac < 1:248338/149‑1 (MQ=17) CGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaaa > 7:204233‑M1/1‑148 (MQ=255) GATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAAcc < 4:13310‑M1/149‑1 (MQ=255) catacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg < 2:127395‑M2/89‑1 (MQ=255) ccAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGAACAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggc > 6:178007/1‑149 (MQ=17) atCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTAt > 8:312065/1‑148 (MQ=32) atCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATg < 7:237144/149‑1 (MQ=32) ccgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGa < 4:53493/135‑1 (MQ=32) ccgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGa > 3:53493/1‑135 (MQ=32) cgccTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCct < 7:312065/149‑1 (MQ=32) tctTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa > 4:194570/1‑149 (MQ=32) ctTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAc > 6:10207/1‑149 (MQ=32) ttGCGCTGGCTATCCCGCCTTGGGAGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAc > 3:132321/1‑148 (MQ=17) gcggTGGCTATCCCGTCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGGAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAc < 3:249658/146‑1 (MQ=12) gcgcTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGAc < 8:301413/146‑1 (MQ=32) tGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg > 3:267699/1‑120 (MQ=32) tGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg < 4:267699/120‑1 (MQ=32) gCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCggg < 3:13310/148‑1 (MQ=32) tCCCGCCTTTGGCTCAAGGATTCTGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTTGGCCCTGTTACATAGCGATCAGTTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGTTATGAGCCTCTGACCAACCGGGTAAt < 2:218490/148‑1 (MQ=11) tCCCGCCTTGGGCGCAAGGAGGCGTCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGTGTAAt < 7:164217/148‑1 (MQ=17) gCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCAc < 8:191756/149‑1 (MQ=32) ccTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAAc < 3:143823/135‑1 (MQ=32) ccTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAAc > 4:143823/1‑135 (MQ=32) cgcAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACGAACCGGGTAATGCCACCGGGgcgc > 3:286978/1‑149 (MQ=17) gcAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGgcgc > 7:80808/1‑148 (MQ=32) aggaggCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAgg < 3:194570/149‑1 (MQ=32) gaggCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGgcg > 3:118829/1‑149 (MQ=32) gcggcgATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCAACGGGGCGCTAGGAGCTc > 8:256935/1‑149 (MQ=17) | AGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGA‑TGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGCGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATCTGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTC > NC_002947/401217‑401508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |