| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1030530 = | 55 (1.020) | 3 (0.060) | 3/240 | NT | 5.5% | coding (588/1353 nt) | PP_0887 | sensor histidine kinase |
| ? | NC_002947 | 1030592 = | 53 (1.060) | coding (650/1353 nt) | PP_0887 | sensor histidine kinase | |||||
CCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1030684‑1030530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccaggAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACA > NC_002947/1030592‑1030738 CCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAGGGTGATCACAGCCGCC > 8:172086/1‑149CCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCC > 2:343083/1‑149 GTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGC > 8:119778/1‑148 ACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGTGGCAAAAAAGGTGATCACAGCCGCCGCCA > 5:287026/1‑137 ACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGTGGCAAAAAAGGTGATCACAGCCGCCGCCA < 6:287026/137‑1 TCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACGGCCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCAT > 6:153260/1‑149 CTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATG > 2:163562/1‑148 CGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGG > 8:5203/1‑148 GCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAATGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGTGACCATGAGCGTGCTGATCAACGAAATGCGCCAG < 5:85516/149‑1 GCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAG > 2:142476/1‑149 GCCGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAG < 5:153260/149‑1 CGCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGA > 6:165336/1‑149 GCCAGGAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGAGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGAC < 1:235028/149‑1 GGATCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACA < 6:114410/149‑1 CCAGTTCATGGGCGGCACCGGCGGCCTGGGTAGCCACAGCCAGCAGTTGCTCGTCGCGCAGGCTTTCTTCACGCCGCTCTGAACGCAGCTGCTCCTGGCGGCGCAGCTCTTCGGCCATGCGCGCGGCAAAAAAGGTGATCACAGCCGCCGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1030684‑1030530‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgccaggAGCAGCTGCGTTCAGAGCGGCGTGAAGAAAGCCTGCGCGACGAGCAACTGCTGGCTGTGGCTACCCAGGCCGCCGGTGCCGCCCATGAACTGGGTACGCCGCTGGCGACCATGAGCGTGCTGATCAACGAAATGCGCCAGGACCACA > NC_002947/1030592‑1030738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |