| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1485867 | 34 (0.630) | 5 (0.100) | 5/242 | NT | 12.0% | coding (756/1098 nt) | yhdY | amino acid ABC transporter permease |
| ? | NC_002947 | = 1485897 | 42 (0.830) | coding (786/1098 nt) | yhdY | amino acid ABC transporter permease | |||||
GCGGGGCGTACCGCTGATCACCGTACTGTTCATGTCGTCGGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1485714‑1485867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcggcTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGCGCACCACCTCGGCGATGTACGCCGACTGGAACAGGATCACACCGATCATCGCCCGCAGCAGCTTGTCGAAGCTCATGCCTTCTGGCAGGAACAACGGCAGCATCACC < NC_002947/1485897‑1485753 GCGGGGCGTACCGCTGATCACCGTACTGTTCATGTCGTCGGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGC < 8:27591/146‑1 CGGGGCGTACCGCTGATCACCGTACTGTTCATGTCGTCGGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGG < 6:208700/149‑1 GGGCGTACCGCTGATCACCGTACTGTTCATGTCGTCGGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCG < 8:449/149‑1 GGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCG > 3:65117/1‑149 ATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCG < 6:37209/148‑1 TGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGC < 4:65117/148‑1 TGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGCGCA > 5:352997/1‑82 TGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGCGCA < 6:352997/82‑1 CGCGGCGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGCGCACCACCTCGGCGATGTACGCCGACTGGAACAGGATCACACCGATCATCGCCCGCAGCAGCTTGTCGAAGCTCATGCCTTCTGGCAGGAACAACGGCAGCA > 7:164553/1‑149 GCGGCGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGCGCACCACCTCGGCGATGTACGCCGACTGGAACAGGATCACACCGATCATCGCCCGCAGCAGCTTGTCGAAGCTCATGCCTTCTGGCAGGAACAACGGCAGCAT < 2:40387/149‑1 CGGCTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGCGCACCACCTCGGCGATGTACGCCGACTGGAACAGGATCACACCGATCATCGCCCGCAGCAGCTTGTCGAAGCTCATGCCTTCTGGCAGGAACAACGGCAGCATCACC < 7:255330/149‑1 GCGGGGCGTACCGCTGATCACCGTACTGTTCATGTCGTCGGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1485714‑1485867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcggcTTCGTACTGGCCCTTGGGGATGGCCTGCAGGCCGCCGCGCACCACCTCGGCGATGTACGCCGACTGGAACAGGATCACACCGATCATCGCCCGCAGCAGCTTGTCGAAGCTCATGCCTTCTGGCAGGAACAACGGCAGCATCACC < NC_002947/1485897‑1485753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |