New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1485867	34 (0.630)	5 (0.100)	5/242	NT	12.0%	coding (756/1098 nt)	yhdY	amino acid ABC transporter permease
	?	NC_002947	= 1485897	42 (0.830)					coding (786/1098 nt)	yhdY	amino acid ABC transporter permease

GTCGGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGTTC  >  NC_002947/1485750‑1486044                                                                                                                                                    |                                                                                                                                                    gtcgGTTATGCTGCCGTTGTGCATGCCAGAAGGCAGGAGCTTCGACAAGCTGCTGCGGGCGATGATGTGTGTGATCCTGATCCATTCGGGGTACATGGCCGAGGTGGTGCGCGGGGGCCTGCAGGCCATCCGCAAGGGCCAGTACGAAg                                                                                                                                                    <  2:199866/149‑1 (MQ=255)    ggTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccg                                                                                                                                                 <  7:255330‑M2/149‑5 (MQ=255)        aTGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgc                                                                                                                                             <  2:40387‑M2/149‑9 (MQ=255)         tgctgcCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcg                                                                                                                                            >  7:164553‑M2/1‑140 (MQ=255)                      ccTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCtt                                                                                                                                <  6:32912/148‑1 (MQ=255)                              aaGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTg                                                                                                                        >  6:245154/1‑148 (MQ=255)                              aaGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTg                                                                                                                        <  5:245154/148‑1 (MQ=255)                                      aGCTTCGACAAGCGGCTGCGGGCGATGATCGGTGTGATCCTGTTCCCGTGGGCGTACATCGCCGAGGTGGTGGGGGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGAt                                                                                                               <  2:97149/149‑1 (MQ=255)                                            gACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGc                                                                                                          <  1:40387/148‑1 (MQ=255)                                              cAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTgg                                                                                                       <  6:309379/149‑1 (MQ=255)                                                   tgctgcGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATc                                                                                                  >  6:190414/1‑149 (MQ=255)                                                    gctgcGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCt                                                                                                 >  1:153404/1‑149 (MQ=255)                                                         gggCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCg                                                                                            <  4:252428/149‑1 (MQ=255)                                                             gatgatCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGc                                                                                           >  2:8142/1‑146 (MQ=255)                                                             gatgatCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGc                                                                                           <  1:8142/146‑1 (MQ=255)                                                              atgatCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGgc                                                                                       <  2:153404/149‑1 (MQ=255)                                                                     gtgtGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAg                                                                                >  4:259389/1‑149 (MQ=255)                                                                          aTCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTtgt                                                                           >  3:133138/1‑149 (MQ=255)                                                                          aTCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTtg                                                                            <  6:202727/148‑1 (MQ=255)                                                                          aTCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTtg                                                                            <  4:166081/148‑1 (MQ=255)                                                                          aTCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCACAGGCGCTGAAGCTtgt                                                                           <  5:190414/149‑1 (MQ=255)                                                                                  ccAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGCTCCCCg                                                                   >  5:184595/1‑149 (MQ=255)                                                                                    aGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGc                                                                 <  3:259389/149‑1 (MQ=255)                                                                                         gCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGt                                                            >  3:196288/1‑149 (MQ=255)                                                                                             aCATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAac                                                        >  8:154936/1‑149 (MQ=255)                                                                                                  gCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCt                                                    <  7:154936/148‑1 (MQ=255)                                                                                                   ccGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCtt                                                   >  4:215488/1‑148 (MQ=255)                                                                                                    cGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCa                                                 <  4:196288/149‑1 (MQ=255)                                                                                                           gtgCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGccc                                           <  4:133138/148‑1 (MQ=255)                                                                                                            tgCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactggaaca                                                                                                            >  5:352997‑M2/1‑41 (MQ=255)                                                                                                            tgCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactggaaca                                                                                                            <  6:352997‑M2/82‑42 (MQ=255)                                                                                                               gcggcgGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactggaacaggatcacaccgatcatcgcccgcagcagcttgtcgaagctcatgccttctggcaggaacaacggcagca                                       <  4:65117‑M2/148‑111 (MQ=255)                                                                                                                cggcggCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactggaacaggatcacaccgatcatcgcccgcagcagcttgtcgaagctcatgccttctggcaggaacaacggcagcat                                      <  6:37209‑M2/148‑112 (MQ=255)                                                                                                                  gcggcCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAg                                   >  8:148389/1‑149 (MQ=255)                                                                                                                  gcggcCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAg                                   <  8:27517/149‑1 (MQ=255)                                                                                                                   cggcCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactggaacaggatcacaccgatcatcgcccgcagcagcttgtcgaagctcatgccttctggcaggaacaacggcagcatcacc                                  >  3:65117‑M2/1‑34 (MQ=255)                                                                                                                           acgCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGc                          <  8:255330/147‑1 (MQ=255)                                                                                                                             gCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCt                        >  2:157787/1‑149 (MQ=255)                                                                                                                                   cccAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGa                   <  1:157787/148‑1 (MQ=255)                                                                                                                                   cccAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGa                   >  1:172645/1‑148 (MQ=255)                                                                                                                                   cccAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGa                   <  3:215488/148‑1 (MQ=255)                                                                                                                                   cccAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGATGGTGATCTTGACGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGa                   >  8:142220/1‑148 (MQ=255)                                                                                                                                    ccAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGt                                        <  7:148240/126‑1 (MQ=255)                                                                                                                                    ccAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGt                                        >  8:148240/1‑126 (MQ=255)                                                                                                                                     cAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCtt                                                                             <  2:9061/88‑1 (MQ=255)                                                                                                                                          gCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTc                                                           <  7:202484/101‑1 (MQ=255)                                                                                                                                          gCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTc                                                           >  8:202484/1‑101 (MQ=255)                                                                                                                                          gCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGatcatcatc           <  2:172645/149‑1 (MQ=255)                                                                                                                                           ccAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGTGCTGGTGATCTTGCCGCAGCCGCTGAAGCTTGTGATCCCCGGAATCGTCAACAACTGCATTGCCCTGTTCTCGGACACCAGCCTGGTGatca                >  8:266829/1‑143 (MQ=255)                                                                                                                                           ccAGAACGCAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGatca                <  7:266829/143‑1 (MQ=255)                                                                                                                                             aGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGc        <  7:148389/149‑1 (MQ=255)                                                                                                                                                  gAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGtt   >  2:179008/1‑149 (MQ=255)                                                                                                                                                  gAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCCTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGtt   >  2:13459/1‑149 (MQ=255)                                                                                                                                                   aaGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGTTc  >  2:72397/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GTCGGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGTTC  >  NC_002947/1485750‑1486044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.