New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1574448 =	61 (1.130)	6 (0.120)	8/248	NT	9.4%	intergenic (+11/+42)	pcaC/pcaP	4‑carboxymuconolactone decarboxylase/porin
	?	NC_002947	1574480 =	58 (1.120)					intergenic (+43/+10)	pcaC/pcaP	4‑carboxymuconolactone decarboxylase/porin

GTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAAGCGCCCTGTTGCAGGG‑GCCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1574597‑1574448 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgCGAATGGCCTTTACACCGATGCCTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCT  >  NC_002947/1574480‑1574624                                                                                                                                                                                                                                                                                                          GTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAAGCGCCCTGTTGCAGGG‑GCCTGCCC                                                                                                                                                    <  3:10412/149‑1  TGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAAGCGCCCTGTTGCAGGG‑GCCTGCCCG                                                                                                                                                   >  3:66076/1‑149        CGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCACGGGCAGGC‑CCCTGCGACAGGGCGCTTGCCCGCGAATG                                                                                                                                             <  5:220935/149‑1         GGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAGGC‑CCCTGCAACAGGGCGCTTGCCCGCGAATGG                                                                                                                                            <  8:237651/149‑1               TGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAGGC‑CCCTGCAACAGGGCGCTTGCCCGCGAAT                                                                                                                                              <  7:309120/141‑1               TGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAGGC‑CCCTGCAACAGGGCGCTTGCCCGCGAAT                                                                                                                                              >  8:309120/1‑141                   TTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGTCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAAGCGCCCTGTTGCAGGG‑GCCTGCCCG                                                                                                                                                   >  5:301785/1‑132                   TTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGTCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAAGCGCCCTGTTGCAGGG‑GCCTGCCCG                                                                                                                                                   <  6:301785/132‑1                      ATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAGGC‑CCCTGCAACAGGGCGCTTGCCCGCGAATGGCCTTTACACCGAT                                                                                                                               <  6:215878/149‑1                                                                                                                                  CCTGTCGCAGGG‑GCCTGCCCGTGAATGGCCTTTACACCGATGCCTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGC                   <  6:220935/149‑1                                                                                                                                      TTGCAGGG‑GCCTGCCCGCGAATGGCCTTTACACCGATGCCTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGA               <  5:215878/149‑1                                                                                                                                        GCAGGG‑GCCTGCCCGCGAATGGCCTTTACACCGATGCCTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGAT              <  7:237651/148‑1                                                                                                                                                    CCCGCGAATGGCCTTTACACCGATGCCTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCT  >  3:5029/1‑149                                                                                                                                                                                                                                                                                                          GTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATTGCCATGCGGCAAAAAAAGGCATCGGTGTAAAGGCCATTCGCGGGCAAGCGCCCTGTTGCAGGG‑GCCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1574597‑1574448 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgCGAATGGCCTTTACACCGATGCCTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCT  >  NC_002947/1574480‑1574624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.