| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1583197 | 68 (1.260) | 6 (0.120) | 6/248 | NT | 8.4% | coding (386/633 nt) | ttgR | HTH‑type transcriptional regulator TtgR |
| ? | NC_002947 | = 1583211 | 66 (1.280) | coding (400/633 nt) | ttgR | HTH‑type transcriptional regulator TtgR | |||||
GCGAGGATGAACTCGACCCGCTTGGCTGCATGCGCAAGCTGCTGTTGCAAGTGTTTAACGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1583047‑1583197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaCCGCACTCTGGCGCTGCTGGCGAATTTCACACATGTCATCGGTGAACTCGCACTTGTGATGCAGGATTTCATTGATACGACGGGTTCGGGCATCGAGCACCAGCTCGTTAAACACTTGCAACAGCAGCTTGCGCATGCAGCCAAGCGG < NC_002947/1583211‑1583064 GCGAGGATGAACTCGACCCGCTTGGCTGCATGCGCAAGCTGCTGTTGCAAGTGTTTAACGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAG > 5:157184/1‑149 GAGGATGAACTCGACCCGCTTGGCTGCATGCGCAAGCTGCTGTTGCAAGTGTTTAACGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCA > 2:336978/1‑149 GACCCGCTTGGCTGCATGCGCAAGCTGCTGTTGCAAGTGTTTAACGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCACCGCACTCTGGC > 4:12438/1‑149 GGCTGCATGCGCAAGCTGCTGTTGCAAGTGTTTAACGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCACCGCACTCTGGCGCTGCTG < 3:12438/147‑1 TGCGCAAGCTGCTGTTGCAAGTGTTTAACGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCACCGCACTCTGGCGCTGCTGGCGAATTT > 4:208138/1‑148 CGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAG > 2:112141/1‑91 CGAGCTGGTGCTCCATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAG < 1:112141/91‑1 CTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCACCGCACTCTGGCGCTGCTGGCGAATTTC < 3:2021/111‑1 CTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCACCGCACTCTGGCGCTGCTGGCGAATTTC > 4:2021/1‑111 CGATGACATGTGTGAAATTCGCCAGCAGCGCCAGAGTGCGGTGCTGGCGAATTTCACACATGTCATCGGTGAACTCGCACTTGTGATGCAGGATTTCATTGATACGACGGGTTCGGGCATCGAGCACCAGCTCGTTAAACACTTGCAA > 3:208138/1‑148 CCAGCACCGCACTCTGGCGCTGCTGGCGTATTTCACACATGTCATCGGTGAACTCGCACTTGTGATGCAGGATTTCATTGATACGACGGGTTCGGGCATCGAGCACCAGCTCGTTAAACACTTGCAACAGCAGCTTGCGCATGCAGCC > 1:195417/1‑148 ACCGCACTCTGGCGCTGCTGGCGAATTTCACACATGTCATCGGTGAACTCGCACTTGTGATGCAGGATTTCATTGATACGACGGGTTCGGGCATCGAGCACCAGCTCGTTAAACACTTGCAACAGCAGCTTGCGCATGCAGCCAAGCGG > 4:335631/1‑149 GCGAGGATGAACTCGACCCGCTTGGCTGCATGCGCAAGCTGCTGTTGCAAGTGTTTAACGAGCTGGTGCTCGATGCCCGAACCCGTCGTATCAATGAAATCCTGCATCACAAGTGCGAGTTCACCGATGACATGTGTGAAATTCGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1583047‑1583197‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcaCCGCACTCTGGCGCTGCTGGCGAATTTCACACATGTCATCGGTGAACTCGCACTTGTGATGCAGGATTTCATTGATACGACGGGTTCGGGCATCGAGCACCAGCTCGTTAAACACTTGCAACAGCAGCTTGCGCATGCAGCCAAGCGG < NC_002947/1583211‑1583064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |