New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1748726 =	61 (1.130)	3 (0.060)	3/248	NT	5.3%	intergenic (‑59/‑273)	PP_1548/PP_5744	hypothetical protein/hypothetical protein
	?	NC_002947	= 4416405	49 (0.950)					coding (81/309 nt)	PP_3902	hypothetical protein

GCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1748879‑1748726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatttc‑CCGTCTGGCCCTGTCGCCAAGGCCAGCCAGTGAAATCGGTATTGCTCAGCAAACCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTGCGTTGCGTACTGTCCACCAGTTCTCAACGGCCGGCTTAACTCGGCGCCTG  <  NC_002947/4416405‑4416267                                                                                                                                                                                                                                                                                                        GCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCG                                                                                                                                                   <  6:108697/149‑1                                            CACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTC‑CCGTCTGGCCCTGTTGCCAAGGCCAGCCAGTGAAATCG                                                                                                       <  5:231804/149‑1                                            CACCAGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTC‑CCGTCTGGCCCTGTCGCCAAGGCCAGCCAGTGAAATCG                                                                                                       <  1:282222/149‑1                                                                                        TACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTC‑CCGTCTGGCCCTGTCGCCAAGGCCAGCCAGTGAAATCG                                                                                                       >  6:163000/1‑105                                                                                                                                                 tACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGAC‑GGGAAATCGGTATTGCTCAGCAAACCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTGCGTTGCGTACTGTCCACCAGTTCTCAACGGCCGGCTTAACTCGGCGCCTG  >  8:117563/2‑149                                                                                                                                                                                                                                                                                                        GCAGCTCCGGCAGCCACCGCTCTTTAAAAACCAGCAGATGAGCCACCAGGCGCCGAGTTAATCCGGCGATTGAGTTCTGGTGGACGTTACGCAACGTAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGCTTGCTGAGCAACACCGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1748879‑1748726 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatttc‑CCGTCTGGCCCTGTCGCCAAGGCCAGCCAGTGAAATCGGTATTGCTCAGCAAACCTGCGGGCCGACATGTCGAGCGAGGAAGCTTGCTGCGTTGCGTACTGTCCACCAGTTCTCAACGGCCGGCTTAACTCGGCGCCTG  <  NC_002947/4416405‑4416267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.