| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1748726 = | 61 (1.130) | 3 (0.060) | 3/248 | NT | 5.3% | intergenic (‑59/‑273) | PP_1548/PP_5744 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 4416405 | 49 (0.950) | coding (81/309 nt) | PP_3902 | hypothetical protein | |||||
GACGAGCCACCAGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTG > NC_002947/4416257‑4416550 | gACGAGCCACCAGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACgg < 1:1564/149‑1 (MQ=255) accaGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCaa > 8:26809/1‑149 (MQ=255) caGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCCC‑GTCTGGCCCTGTCGCCAAGGCCAGCCAGtgaaatcggta > 8:117563‑M2/1‑138 (MQ=255) caGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACgg < 4:203634/139‑1 (MQ=255) caGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACgg > 3:203634/1‑139 (MQ=255) gcCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCg < 5:61690/149‑1 (MQ=255) aaGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGgca < 5:217116/148‑1 (MQ=255) ccggccgTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCAt < 3:180387/149‑1 (MQ=255) gccgTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTa < 7:190225/149‑1 (MQ=255) ccgTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTac > 2:189929/1‑149 (MQ=255) cgTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGgcagc < 7:183257/142‑1 (MQ=255) cgTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGgcagc > 8:183257/1‑142 (MQ=255) aaCTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAggg > 5:228100/1‑131 (MQ=255) aaCTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAggg < 6:228100/131‑1 (MQ=255) gtggACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACcgacgacg < 1:10292/149‑1 (MQ=255) gtggACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACcgacgac > 6:181234/1‑148 (MQ=255) tggACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGt < 2:54668/133‑1 (MQ=255) tggACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGt > 1:54668/1‑133 (MQ=255) tACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATg > 3:49274/1‑146 (MQ=255) gcagcaAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGaaa < 4:49274/149‑1 (MQ=255) caAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGt > 4:247110/1‑114 (MQ=255) caAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGt < 3:247110/114‑1 (MQ=255) gCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCggg > 5:275386/1‑149 (MQ=255) cTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGgc < 5:181234/149‑1 (MQ=255) tCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACAcgaccgac < 5:161329/119‑1 (MQ=255) tCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACAcgaccgac > 6:161329/1‑119 (MQ=255) ctcgctcgACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGgcgc > 7:92722/1‑147 (MQ=255) ctcgctcgACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGgcgc < 8:92722/147‑1 (MQ=255) ctcgACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGAcc < 7:148256/149‑1 (MQ=255) gACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCAt > 7:11282/1‑148 (MQ=255) tCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCa > 3:148765/1‑147 (MQ=255) tCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCa > 7:46573/1‑147 (MQ=255) tGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGCCCTCAACGCTGa > 4:166256/1‑149 (MQ=255) gAGCAATACCGATTTCACTGGCTGGCCTTGNCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGATGAg > 1:31067/1‑149 (MQ=255) gCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAggg < 7:26809/149‑1 (MQ=255) aCCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTc > 4:252716/1‑148 (MQ=255) cGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGgaaatcggtattgctcagcaaacctgcgggccgacatgtcgagcgaggaagcttgctgcgttgcgtactgtccaccagttctcaacggccggcttaactcggcgcctggtg < 1:282222‑M2/149‑112 (MQ=255) cGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGgaaatcggtattgctcagcaaacctgcgggccgacatgtcgagcgaggaagcttgctgcgttgcgta > 6:163000‑M2/1‑38 (MQ=255) cGATTTCACTGGCTGGCCTTGGCAACAGGGCCAGACGGgaaatcggtgttgctcagcaagcctgcgggccgacatgtcgagcgaggaagcttgctacgttgcgtaacgtccaccagaactcaatcgccggattaactcggcgcctggtg < 5:231804‑M2/149‑112 (MQ=255) gATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGCCCTCAACGCTGATGCCTTctttg < 3:166256/149‑5 (MQ=38) aTTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATg > 5:122396/1‑148 (MQ=255) aTTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATg > 1:170968/1‑148 (MQ=255) aCTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAg > 1:2187/1‑149 (MQ=255) gctggcCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGgcgc < 4:148765/149‑1 (MQ=255) gctggcCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGgcgc > 4:141532/1‑149 (MQ=255) tggcCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGa > 5:297014/1‑149 (MQ=255) ccTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGAtgt < 3:252716/149‑1 (MQ=255) ttGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGc < 4:311160/110‑1 (MQ=255) ttGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGc > 3:311160/1‑110 (MQ=255) ttGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGc > 3:178334/1‑149 (MQ=255) ttGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGc > 5:55869/1‑149 (MQ=255) ttGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGc > 1:43671/1‑149 (MQ=255) ggCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGCCg > 6:46845/1‑149 (MQ=255) gCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACcgacgac < 7:37797/59‑1 (MQ=255) gCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACcgacgac > 8:37797/1‑59 (MQ=255) cAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGCCGGGAc < 6:55869/148‑1 (MQ=255) ggCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAg < 8:11282/149‑1 (MQ=255) gACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGtt > 1:282485/1‑149 (MQ=255) gggAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAaaga > 2:14903/1‑88 (MQ=255) gggAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAaaga < 1:14903/88‑1 (MQ=255) gggAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTg > 8:165113/1‑147 (MQ=255) | GACGAGCCACCAGGCGCCGAGTTAAGCCGGCCGTTGAGAACTGGTGGACAGTACGCAACGCAGCAAGCTTCCTCGCTCGACATGTCGGCCCGCAGGTTTGCTGAGCAATACCGATTTCACTGGCTGGCCTTGGCGACAGGGCCAGACGGGAAATCAACCGCCCGGAGGGCAGCATGTACACGACCGACGACGAGATGAAGATCCGAAAGCCCGGGCGCGTGACCATCACCAAAGAAGGCATCAGCGTTGAGGGCTTCGATGTAAAAGGCGCGATGTGCCGGGACGTAGCCGTTG > NC_002947/4416257‑4416550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |