New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1843013 =	48 (0.890)	6 (0.120)	4/246	NT	11.6%	coding (1781/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	1843050 =	46 (0.900)					coding (1744/2754 nt)	gacS	sensor protein GacS

GCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTCGCGGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1843167‑1843013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagcaCCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAA  >  NC_002947/1843050‑1843196                                                                                                                                                                                                                                                                                                                GCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTCGCGGTGCTCGGTGCCAACCTGGGTAACCTGTCGCC                                                                                                                                                           <  8:269615/149‑1    CTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTCGCGGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGA                                                                                                                                                        <  4:175216/149‑1       tAGCACCAGCTGGAAGACTGCGGCCTCAGCTTGAGCCTGTTCGCCTCCTACGACCAGTTGCTTCAGGGGGTGCAGGCCGCCAGCCAGTCCGGCCTGCCCTTCGAGTTCGCGGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGC                                                                                                                                                      <  2:176267/147‑1                                                                    TGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTCGCGGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGA                                                                                                                                                        <  5:192363/85‑1                                                                    TGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTCGCGGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGA                                                                                                                                                        >  6:192363/1‑85                                                                                                                     GGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGC                                       >  3:73566/1‑149                                                                                                                     GGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGC                                       >  5:182743/1‑149                                                                                                                     GGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGC                                       <  6:182743/149‑1                                                                                                                       TGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGCACCGCAAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTC                                     >  7:64227/1‑149                                                                                                                       TGCTCGCTGCCAACCTGGGTAACCTGTCGCCCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTC                                     >  2:296034/1‑149                                                                                                                         CTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGCACCGCTAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCA                                   <  8:64227/149‑1                                                                                                                                                          CACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAA  >  8:106306/1‑149                                                                                                                                                          CACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAA  >  8:184178/1‑149                                                                                                                                                          CACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGAACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAA  >  7:184098/1‑149                                                                                                                                                                                                                                                                                                                GCACTGGAGCACCAGCTGGAAGACTGCGGCCTCAGCGTGAGCCTGTTCGCCTCCTACGACCAGTTGCTGCAGGGGGTGCAGGCCGCCAGCCAGGCCGGCCTGCCCTTCGAGTTCGCGGTGCTCGGTGCCAACCTGGGTAACCTGTCGCCCGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1843167‑1843013 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgagcaCCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCAGCTGGTGCTCCAGTGCCTGGCGCGCCAGTTCGTGGCCATCGACAA  >  NC_002947/1843050‑1843196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.