New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1843013 =	48 (0.890)	6 (0.120)	4/246	NT	11.6%	coding (1781/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	1843050 =	46 (0.900)					coding (1744/2754 nt)	gacS	sensor protein GacS

CGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCA  >  NC_002947/1842866‑1843151                                                                                                                                                    |                                                                                                                                            ttgtcgatggccacgaactggcgcgccaggcactggagcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggttcaggccgccagccaggccggcctgcccttcgagttcgcggTg                                                                                                                                            >  7:184098‑M1/148‑149 (MQ=255) ttgtcgatggccacgaactggcgcgccaggcactggagcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagttcgcggTg                                                                                                                                            >  8:106306‑M1/148‑149 (MQ=255) ttgtcgatggccacgaactggcgcgccaggcactggagcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagttcgcggTg                                                                                                                                            >  8:184178‑M1/148‑149 (MQ=255)      cTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCgg                                                                                                                                       >  4:125961/1‑149 (MQ=255)        tGCGGGGGCAGGTCGGCGTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGc                                                                                                                                     <  2:160450/149‑1 (MQ=255)           gggTGCAGGTCGGCTTGGACAGCATATGGCCAAGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGGTGATGAGTATGGCCCAGTTg                                                                                                                                            >  7:213432/1‑139 (MQ=255)           gggTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTg                                                                                                                                            <  8:213432/139‑1 (MQ=255)            ggTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑a                                                                                                                                <  6:182123/149‑1 (MQ=255)            ggTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGAGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑a                                                                                                                                <  1:109917/149‑1 (MQ=255)                              cAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCAc                                                                                                              <  1:32645/149‑1 (MQ=255)                               aGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCAcc                                                                                                             >  5:133985/1‑149 (MQ=255)                                 cAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCAcc                                                                                                             >  8:50988/1‑147 (MQ=255)                                 cAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCAcc                                                                                                             >  3:328062/1‑147 (MQ=255)                                  tggagcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagttagcggTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAg                                                                                                          <  8:64227‑M1/35‑1 (MQ=255)                                  aaCTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAg                                                                                                          <  7:170030/149‑1 (MQ=255)                                    gagcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagtttgcggTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCa                                                                                                        >  7:64227‑M1/113‑149 (MQ=255)                                    gagcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagttcgcggTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCAGCGAGCa                                                                                                        >  2:296034‑M1/113‑149 (MQ=255)                                    cTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCa                                                                                                        >  7:29388/1‑149 (MQ=255)                                    cTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCATGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGCCGAC‑AGGTTACCCAGGTTGGCACCGAGCa                                                                                                        >  7:130621/1‑149 (MQ=255)                                      gcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagttcgcggTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCAcc                                                                                                      <  6:182743‑M1/39‑1 (MQ=255)                                      gcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagttcgcggTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCAcc                                                                                                      >  5:182743‑M1/111‑149 (MQ=255)                                      gcaccagctggaagactgcggcctcagcgtgagcctgttcgcctcctacgaccagttgctgcagggggtgcaggccgccagccaggccggcctgcccttcgagttcgcggTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCAcc                                                                                                      >  3:73566‑M1/111‑149 (MQ=255)                                            ggCCGTTGGGCAGGTACAGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAAc                                                                                                >  8:121695/1‑149 (MQ=255)                                             gggttttggCAGGTACGGGTTGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTTGCATTGGTAACGCTCGAGCTGCTGATGATAATTGCCCAGTTGCTCGGGCGAC‑AGGTTACCCTGTTTGGCACCGAGCACCGCGAACt                                                                                               <  7:50988/142‑1 (MQ=255)                                             gCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGTGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAAc                                                                                                <  7:232747/148‑1 (MQ=255)                                               cGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTc                                                                                              >  5:1951/1‑148 (MQ=255)                                                 ttGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGaa                                                                                           <  6:178963/149‑1 (MQ=255)                                                         gTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAc                                                                                                                                  >  5:121133/1‑103 (MQ=255)                                                         gTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAc                                                                                                                                  <  6:121133/103‑1 (MQ=255)                                                         gTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAggc                                                                                   <  4:328062/149‑1 (MQ=255)                                                               gtggtACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCct                                                                             <  3:125961/149‑1 (MQ=255)                                                                  gtACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCctggc                                                                          >  5:149110/1‑149 (MQ=255)                                                                             gCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTg                                                                >  5:305877/1‑148 (MQ=255)                                                                             gCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGc                                                               >  7:311290/1‑149 (MQ=255)                                                                                     gtCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTg                                                       <  8:29388/149‑1 (MQ=255)                                                                                       cGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTgca                                                     >  8:151682/1‑149 (MQ=255)                                                                                          gCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTgcagc                                                   >  4:114294/1‑148 (MQ=255)                                                                                            acaGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAAc                                                >  8:149910/1‑149 (MQ=255)                                                                                             caGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACt                                               <  7:121695/149‑1 (MQ=255)                                                                                              aGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTg                                              <  8:130621/149‑1 (MQ=255)                                                                                              aGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTg                                              >  2:120207/1‑149 (MQ=255)                                                                                                   tACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTc                                           >  1:156452/1‑147 (MQ=255)                                                                                                   tACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTc                                           <  2:156452/147‑1 (MQ=255)                                                                                                   tACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGt                                         <  7:151682/149‑1 (MQ=255)                                                                                                        aTTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCAcc                                                            <  1:233589/125‑1 (MQ=255)                                                                                                        aTTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCAcc                                                            >  2:233589/1‑125 (MQ=255)                                                                                                        aTTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTaggag                                    <  7:53644/149‑1 (MQ=255)                                                                                                            gCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGa                                <  6:305877/149‑1 (MQ=255)                                                                                                             cAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGc                                  <  6:2714/146‑1 (MQ=255)                                                                                                             cAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGc                                  >  5:2714/1‑146 (MQ=255)                                                                                                                tGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAg                            <  6:133985/149‑1 (MQ=255)                                                                                                                                 ctgATGATAATGGCCCAGTTGCTCGGGCGACTAGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCCCCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCg            >  1:210271/1‑149 (MQ=255)                                                                                                                                   gatgatAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAg         >  6:142755/1‑149 (MQ=255)                                                                                                                                      gatAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCt      >  4:135274/1‑149 (MQ=255)                                                                                                                                          aTGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTcc   <  6:149110/148‑1 (MQ=255)                                                                                                                                            ggCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAAc                                                <  5:57852/101‑1 (MQ=255)                                                                                                                                            ggCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAAc                                                >  6:57852/1‑101 (MQ=255)                                                                                                                                              cccAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCa  >  1:262210/1‑145 (MQ=255)                                                                                                                                              cccAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCa  <  2:262210/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            CGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTGGTAACGCTCGAGCTGCTGATGATAATGGCCCAGTTGCTCGGGCGAC‑AGGTTACCCAGGTTGGCACCGAGCACCGCGAACTCGAAGGGCAGGCCGGCCTGGCTGGCGGCCTGCACCCCCTGCAGCAACTGGTCGTAGGAGGCGAACAGGCTCACGCTGAGGCCGCAGTCTTCCA  >  NC_002947/1842866‑1843151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.