| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1941999 | 51 (0.940) | 3 (0.060) | 3/244 | NT | 6.4% | coding (541/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX |
| ? | NC_002947 | = 1942046 | 40 (0.790) | coding (588/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX | |||||
ACCTCAAGACCGATAACAGCTTCAAGGACAGGATTGTTGGCATCGACGCAGGCTCCGGTGTGATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1941850‑1941999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcggaacCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCAGTCATCGCCGCACCCGAGCTGGCCTGCAACTTGTAACTGGTCAGGCCATAGTCCTTGATCGCCTGGTCGGTCTTGAGCATCACACCG < NC_002947/1942046‑1941905 ACCTCAAGACCGATAACAGCTTCAAGGACAGGATTGTTGGCATCGACGCAGGCTCCGGTGTGATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAA > 8:120244/1‑149 GTGTGATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCAG < 7:120244/149‑1 TCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCA < 5:97162/139‑1 TCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCA > 6:97162/1‑139 CGGAACCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCAGTCATCGCCGCACCCGAGCTGGCCTGCAACTTGTAACTGGTCAGGCCATAGTCCTTGATCGCCTGGTCGGTCTTGAGCATCACACCG > 7:12934/1‑148 AACCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCAGTCATCGCCGCACCCGAGCTGGCCTGCAACTTGTAACTGGTCAGGCCATAGTCCTTGATCGCCTGGTCGGT < 3:165281/129‑1 AACCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCAGTCATCGCCGCACCCGAGCTGGCCTGCAACTTGTAACTGGTCAGGCCATAGTCCTTGATCGCCTGGTCGGT > 4:165281/1‑129 ACCTCAAGACCGATAACAGCTTCAAGGACAGGATTGTTGGCATCGACGCAGGCTCCGGTGTGATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1941850‑1941999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcggaacCCAGCCGGTCACCGCAATCGACTGCTGCTTGGCATAGGCACGGCCCAGTTCCGCAGTCATCGCCGCACCCGAGCTGGCCTGCAACTTGTAACTGGTCAGGCCATAGTCCTTGATCGCCTGGTCGGTCTTGAGCATCACACCG < NC_002947/1942046‑1941905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |