New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1941999	51 (0.940)	3 (0.060)	3/244	NT	6.4%	coding (541/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX
	?	NC_002947	= 1942046	40 (0.790)					coding (588/864 nt)	betX	choline/betaine/carnitine ABC transporter substrate‑binding protein BetX

CGGTGTGATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCGGAAGTGGCGGAGTTCCTGAAGAAGTT  >  NC_002947/1941905‑1942192                                                                                                                                              |                                                                                                                                                     cGGTGTGATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGgttccg                                                                                                                                                >  7:12934‑M2/1‑142 (MQ=255)      tgATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTg                                                                                                                                           >  7:179598/1‑148 (MQ=255)       gATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGa                                                                                                                                         >  8:126239/1‑149 (MQ=255)          gCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGt                                                                                                                                      >  1:26317/1‑149 (MQ=255)            tCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTc                                                                                                                                    >  6:96967/1‑149 (MQ=255)            tCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTc                                                                                                                                    >  4:154681/1‑149 (MQ=255)              aataccgaccAGTCGATCAATGACTTTGGCCTGACCAGTTAAAAGTTGCAGGCCATCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTc                                                                                                                                    <  7:47799/144‑1 (MQ=255)              aaGACCGACCAGGCGATCGAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGc                                                                                                                                  >  2:172031/1‑149 (MQ=255)              aaGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACt                                                                                                                                            <  2:185132/139‑1 (MQ=255)              aaGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTCCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTCGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACt                                                                                                                                            >  1:185132/1‑139 (MQ=255)              aaGAACGACCAGGCGATCAAGGACAATGGCCTGACCAGTTACAAGGTGCAGGCCAGCTCGGGCGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTc                                                                                                                                    <  4:300020/147‑1 (MQ=255)               aGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGc                                                                                                                                  >  7:67193/1‑148 (MQ=255)                 accgaccAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGgtt                                                                                                                                                   >  4:165281‑M2/1‑126 (MQ=255)                 accgaccAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGgtt                                                                                                                                                   <  3:165281‑M2/129‑4 (MQ=255)                          gCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCt                                                                                                                      >  3:142921/1‑149 (MQ=255)                                 aGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAg                                                                                                                  <  4:181494/146‑1 (MQ=255)                                 aGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAg                                                                                                                  >  3:181494/1‑146 (MQ=255)                                  ggACTAAGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTcc                                                                                                              >  1:91988/1‑149 (MQ=255)                                        tGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGa                                                                                                          <  1:172031/147‑1 (MQ=255)                                               aCCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGaa                                                                                                 <  2:60656/149‑1 (MQ=255)                                                 cAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGc                                                                                                                                  >  1:202981/1‑114 (MQ=255)                                                 cAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGc                                                                                                                                  <  2:202981/114‑1 (MQ=255)                                                   gTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑Gc                                                                                           <  8:67193/149‑1 (MQ=255)                                                   gTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑Gc                                                                                           <  2:26317/149‑1 (MQ=255)                                                        actggtcAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGtata                                                                                      <  6:131266/143‑1 (MQ=255)                                                         aGTTGCAGGCCAGCTCGTGTGCGGCGATGACTGCGTAACTGGGCCGTTCCTATGCCAAGCAGCAGTCGATTGCGGTGACAGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTatat                                                                                     <  5:345850/149‑1 (MQ=255)                                                               aGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGcgcg                                                                               >  5:298793/1‑149 (MQ=255)                                                                 gCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCTGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCgg                                                                              >  8:19649/1‑148 (MQ=255)                                                                 gCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCgg                                                                              >  2:103554/1‑148 (MQ=255)                                                                 gCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCgg                                                                              >  3:124971/1‑148 (MQ=255)                                                                            tGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGa                                                                  <  5:216504/149‑1 (MQ=255)                                                                               ggcgATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGaa                                                                 >  2:339779/1‑147 (MQ=255)                                                                               ggcgATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACa                                                               <  6:298793/149‑1 (MQ=255)                                                                                      aCTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCgg                                                        <  5:96967/149‑1 (MQ=255)                                                                                       cTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGgttccgcagtcatcgccgcacccgagctggcctgcaacttgtaactggtcaggccatagtccttgatcgcctggtcggtcttgagcatcacac                                                         <  7:120244‑M2/149‑94 (MQ=255)                                                                                       cTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGt                                                                    <  1:56097/136‑1 (MQ=255)                                                                                       cTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGt                                                                    >  2:56097/1‑136 (MQ=255)                                                                                        tGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGgttccgcagtcatcgccgcacccgagctggcctgcaacttgtaactggtcaggccatagtccttgatcgcctggtcggtcttga                                                                  <  5:97162‑M2/139‑85 (MQ=255)                                                                                        tGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGgttccgcagtcatcgccgcacccgagctggcctgcaacttgtaactggtcaggccatagtccttgatcgcctggtcggtcttga                                                                  >  6:97162‑M2/1‑55 (MQ=255)                                                                                        tGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCgg                                                        >  3:90945/1‑147 (MQ=255)                                                                                                   gCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTg                                           <  1:161289/149‑1 (MQ=255)                                                                                                   gCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTg                                           <  7:126239/149‑1 (MQ=255)                                                                                                                cAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCAc                              >  7:135937/1‑149 (MQ=255)                                                                                                                  agcagcAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAGTCGCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCAc                              <  1:103554/149‑1 (MQ=255)                                                                                                                  agcagcAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCg                            <  4:124971/149‑1 (MQ=255)                                                                                                                   gcagcaGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCgg                           <  8:179598/149‑1 (MQ=255)                                                                                                                      gcagTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCGGAAg                        <  3:154681/149‑1 (MQ=255)                                                                                                                        agTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCGGAAGTg                      >  2:282361/1‑149 (MQ=255)                                                                                                                                  ggTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAg                                  >  8:13567/1‑127 (MQ=255)                                                                                                                                         ggCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCGGAAGTGGCGGAGTTCCTgaagaa     <  2:91988/149‑1 (MQ=255)                                                                                                                                            tGGGTTCCGCACTGGATGTTCGCCAAGTGGTAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCGGAAGTGGCGGAGTTCCTGAAGAAGtt  >  1:29477/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                     CGGTGTGATGCTCAAGACCGACCAGGCGATCAAGGACTATGGCCTGACCAGTTACAAGTTGCAGGCCAGCTCGGGTGCGGCGATGACTGCGGAACTGGGCCGTGCCTATGCCAAGCAGCAGTCGATTGCGGTGACCGGCTGGGTTCCGCACTGGATGTTCGCCAAGTGGAAGCTGAAGTTCCTCGAAGACCCGAAAG‑‑GCGTATATGGCGCGGCAGAAACCGTGAACAGCATCGGCAGCAAGGAACTGGCCACCAAGGCACCGGAAGTGGCGGAGTTCCTGAAGAAGTT  >  NC_002947/1941905‑1942192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.