New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1971348 =	50 (0.920)	4 (0.080)	4/252	NT	7.8%	coding (277/2772 nt)	gyrA	DNA gyrase subunit A
	?	NC_002947	1971393 =	46 (0.880)					coding (322/2772 nt)	gyrA	DNA gyrase subunit A

CGGTTTCCTTGTGCAGGTCGGCCAGCAGTTCGTGGGCCAGTTTGGTCATGCGCACTTCGGTGTATCGCATGGCAGCAGCGTTGTCGCCGTCCACCGAACCGAAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1971498‑1971348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCACAAGGAAACCGTCGACTGGGTGCCCAACTACGACGGCACCGAGCAGATCC  >  NC_002947/1971393‑1971537                                                                                                                                                                                                                                                                                                          CGGTTTCCTTGTGCAGGTCGGCCAGCAGTTCGTGGGCCAGTTTGGTCATGCGCACTTCGGTGTATCGCATGGCAGCAGCGTTGTCGCCGTCCACCGAACCGAAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGG                                                                                                                                                     <  5:102835/149‑1  GGTTTCCTTGTGCAGGTCGGCCAGCAGTTCGTGGGCCAGTTTGGTCATGCGCACTTCGGTGTATCGCATGGCAGCAGCGTTGTCGCCGTCGCCCGAACCGAAGTTGCCCTGGCCGTCGACCCGCAGGTAGCGCAACGAGAACGGCTGGG                                                                                                                                                    >  8:255025/1‑149  GGTTTCCTTGTGCAGGTCGGCCAGCAGTTCGTGGGCCAGTTTGGTCATGCGCACTTCGGTGTATCGCATGGCAGCAGCGTTGTCGCCGTCCACCGAACCGAAGTTGCGCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGG                                                                                                                                                    >  5:295906/1‑149                                                                                              CCGAACCGAAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGC                                                                                                                                                   <  5:210748/58‑1                                                                                              CCGAACCGAAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGC                                                                                                                                                   >  6:210748/1‑58                                                                                                    CGAAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCAC                                                   >  7:241870/1‑148                                                                                                      AAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCT                                                                <  7:149253/133‑1                                                                                                      AAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCAAGCGATACACCGAAGTGCGCATGACCAAACTGGCACACGAACTCCT                                                                >  8:149253/1‑133                                                                                                       AGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCACAAGG                                               <  8:241870/149‑1                                                                                                                                                    GGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCACAAGGAAACCGTCGACTGGGTGCCCAACTACGACGGCACCGAGCAGATCC  >  6:301295/1‑149                                                                                                                                                                                                                                                                                                          CGGTTTCCTTGTGCAGGTCGGCCAGCAGTTCGTGGGCCAGTTTGGTCATGCGCACTTCGGTGTATCGCATGGCAGCAGCGTTGTCGCCGTCCACCGAACCGAAGTTGCCCTGGCCGTCGACCAGCAGGTAGCGCAACGAGAACGGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1971498‑1971348 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCACAAGGAAACCGTCGACTGGGTGCCCAACTACGACGGCACCGAGCAGATCC  >  NC_002947/1971393‑1971537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.