New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1971348 =	50 (0.920)	4 (0.080)	4/252	NT	7.8%	coding (277/2772 nt)	gyrA	DNA gyrase subunit A
	?	NC_002947	1971393 =	46 (0.880)					coding (322/2772 nt)	gyrA	DNA gyrase subunit A

GCATCGCCGCGTTCTCTATGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCACAAGGAA  >  NC_002947/1971203‑1971494                                                                                                                                                  |                                                                                                                                                   ggatctgctcggtgccgtcgtagttgggcacccagtcgacggtttccttgtgcaggtcggccagcagttcgtgggccagtttggtcatgcgcacttcggtgtatcgcatggcagcagcgttgtcgccgtccaccgaaccgaagttGccc                                                                                                                                                 >  6:301295‑M1/146‑149 (MQ=255)  cATCGCCGCGTTCTCTATGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGcc                                                                                                                                                  >  4:337420/1‑147 (MQ=255)            ttCTCTATGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAg                                                                                                                                               <  4:136801/140‑1 (MQ=255)            ttCTCTATGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAg                                                                                                                                               >  3:136801/1‑140 (MQ=255)                    gCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTa                                                                                                                              >  2:214348/1‑149 (MQ=255)                     cGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTa                                                                                                                              <  3:337420/148‑1 (MQ=255)                          aGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACctgc                                                                                                                         <  4:41774/148‑1 (MQ=255)                                      aaCGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGc                                                                                                              >  7:178594/1‑147 (MQ=255)                                       aCGACTTTAACAATCCGTACAATAAATCCGCCCGTTTTGTCGGTTACGTGATCGGTATTTACCACCCGCACTGCGACATTTCGGTTTACTACATCATTGTGTGTATGGCCCATCCGTTTTTGTTTGGCTACCTGCTGGTCGACGGCCAg                                                                                                           <  7:50994/149‑1 (MQ=255)                                            tGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCa                                                                                                       >  3:122739/1‑148 (MQ=255)                                              gAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACt                                                                                                    >  2:215440/1‑149 (MQ=255)                                              ccttgtgcaggtcggccagcagttcgtgggccagtttggtcatgcgcacttcggtgtatcgcatggcagcagcgttgtcgccgtccaccgaaccgaagttGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACt                                                                                                    <  8:241870‑M1/49‑1 (MQ=255)                                                  gtgcaggtcggccagcagttcgtgggccagtttggtcatgcgcacttcggtgtatcgcatggcagcagcgttgtcgccgtccaccgaaccgaagttGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACttcg                                                                                                 >  7:241870‑M1/97‑148 (MQ=255)                                                  aaGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACttcgg                                                                                                <  5:319956/149‑1 (MQ=255)                                                    gCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACttcggtt                                                                                              >  6:295906/1‑149 (MQ=255)                                                       gTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACttcggttcgg                                                                                           <  8:178594/149‑1 (MQ=255)                                                        tACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTtcggttcggt                                                                                          <  4:122739/149‑1 (MQ=255)                                                        tACAAGAAATCCCCCCGTGTGGACGGTGACGTGATCGGTAAGTACCACCCGCACGTCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTtcggttcggt                                                                                          <  7:285722/149‑1 (MQ=255)                                                           aaGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGa                                                                                       >  8:77149/1‑149 (MQ=255)                                                               aggagttcgtgtgccagtttggtcatgcgcacttcggtgtatcgcttggcagcagcgttgtcgccgtccaccgaaccgaagttGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACtt                                                                                                   >  8:149253‑M1/84‑133 (MQ=255)                                                               agcagttcgtgggccagtttggtcatgcgcacttcggtgtatcgcatggcagcagcgttgtcgccgtccaccgaaccgaagttGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACtt                                                                                                   <  7:149253‑M1/50‑1 (MQ=255)                                                                      ccGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCaa                                                                                                      >  8:166456/1‑123 (MQ=255)                                                                      ccGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCaa                                                                                                      <  7:166456/123‑1 (MQ=255)                                                                        gtgtGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACgct                                                                          >  5:63740/1‑149 (MQ=255)                                                                        gtgtGGTCGGTGACGTGATCGGGAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACgct                                                                          >  7:215743/1‑149 (MQ=255)                                                                             gTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCtgctgc                                                                     >  8:27888/1‑149 (MQ=255)                                                                                 gTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATg                                                                 <  7:27888/149‑1 (MQ=255)                                                                                      gTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATa                                                            >  5:130524/1‑149 (MQ=255)                                                                                       tGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTAcc                                                                                                                            >  5:16052/1‑84 (MQ=255)                                                                                       tGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTAcc                                                                                                                            <  6:16052/84‑1 (MQ=255)                                                                                         aTCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATacac                                                         >  3:111873/1‑149 (MQ=255)                                                                                            ggTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGa                                                      <  6:63740/149‑1 (MQ=255)                                                                                             gTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCAt                                                                  <  5:178511/136‑1 (MQ=255)                                                                                             gTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCAt                                                                  >  6:178511/1‑136 (MQ=255)                                                                                                 gTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCATGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTgc                                                 >  1:158151/1‑149 (MQ=255)                                                                                                    ccaccCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGc                                                                >  6:11640/1‑131 (MQ=255)                                                                                                    ccaccCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGc                                                                <  5:11640/131‑1 (MQ=255)                                                                                                    ccaccCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCa                                              >  8:32440/1‑149 (MQ=255)                                                                                                    ccaccCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCa                                              >  1:8348/1‑149 (MQ=255)                                                                                                      accCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATg                                            <  1:214348/149‑1 (MQ=255)                                                                                                       cccGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTg                                                                                         >  3:333599/1‑103 (MQ=255)                                                                                                       cccGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTg                                                                                         <  4:333599/103‑1 (MQ=255)                                                                                                       cccGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGa                                           <  5:145326/149‑1 (MQ=255)                                                                                                         cGCACGGCGACACTGCGGTCTACGACACCATCGTGTGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTAGGTTCGGTGGACGGCGACAACGATGCTGCCATGCGATAAACCGAAGTGCGCATGAc                                          >  8:71766/1‑148 (MQ=255)                                                                                                                    acTGCGGCCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCa                              >  6:186281/1‑149 (MQ=255)                                                                                                                     cTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCAc                             <  8:215743/149‑1 (MQ=255)                                                                                                                      tGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCAc                             >  6:347507/1‑148 (MQ=255)                                                                                                                             tACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAActgct                     >  3:186390/1‑149 (MQ=255)                                                                                                                               cGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAActgct                     <  7:77149/147‑1 (MQ=255)                                                                                                                               cGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAActgc                      <  4:111873/146‑1 (MQ=255)                                                                                                                                  cacCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGcc                 >  6:235734/1‑148 (MQ=255)                                                                                                                                   acCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGa               <  6:130524/149‑1 (MQ=255)                                                                                                                                    ccATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGAc              <  2:8348/149‑1 (MQ=255)                                                                                                                                         gTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGc          <  4:186390/148‑1 (MQ=255)                                                                                                                                          tGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGcac        <  5:347507/149‑1 (MQ=255)                                                                                                                                           gCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGcac        >  5:73326/1‑148 (MQ=255)                                                                                                                                                 ggCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCACAAGGaa  <  1:215440/148‑1 (MQ=255)                                                                                                                                                  GCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACttcggttcgg                                                                                           <  5:210748‑M1/58‑1 (MQ=255)                                                                                                                                                  GCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACttcggttcgg                                                                                           >  6:210748‑M1/1‑58 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GCATCGCCGCGTTCTCTATGCGATGAGCGAACTGGGCAACGACTGGAACAAGCCGTACAAGAAATCCGCCCGTGTGGTCGGTGACGTGATCGGTAAGTACCACCCGCACGGCGACACTGCGGTCTACGACACCATCGTGCGTATGGCCCAGCCGTTCTCGTTGCGCTACCTGCTGGTCGACGGCCAGGGCAACTTCGGTTCGGTGGACGGCGACAACGCTGCTGCCATGCGATACACCGAAGTGCGCATGACCAAACTGGCCCACGAACTGCTGGCCGACCTGCACAAGGAA  >  NC_002947/1971203‑1971494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.