| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2054923 | 50 (0.920) | 3 (0.060) | 3/246 | NT | 5.9% | coding (64/1092 nt) | aroC | chorismate synthase |
| ? | NC_002947 | = 2054952 | 48 (0.940) | coding (93/1092 nt) | aroC | chorismate synthase | |||||
GGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2054771‑2054923‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccggTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGATGGTT < NC_002947/2054952‑2054805 GGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGC < 5:51224/149‑1 AACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCATGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGC > 1:109761/1‑149 TATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCAT < 2:109761/148‑1 TATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCA < 8:260185/147‑1 GCCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATA > 1:243879/1‑145 CCCGGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGAT < 3:58550/149‑1 GGTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGATAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGATGGT < 7:232483/149‑1 GTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGATGGTT < 5:195866/149‑1 GGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2054771‑2054923‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccggTGGGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGATGGTT < NC_002947/2054952‑2054805 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |