New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2054923 | 50 (0.920) | 3 (0.060) | 3/246 | NT | 5.9% | coding (64/1092 nt) | aroC | chorismate synthase |
? | NC_002947 | = 2054952 | 48 (0.940) | coding (93/1092 nt) | aroC | chorismate synthase |
AACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTC > NC_002947/2054805‑2055098 | aaCCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCAc < 5:195866‑M2/149‑2 (MQ=255) aCCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTATCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCAcc < 7:232483‑M2/149‑3 (MQ=255) aTCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCAccggg < 3:58550‑M2/149‑6 (MQ=255) tataCTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCAccgggc > 1:243879‑M2/1‑139 (MQ=255) tataCTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCt < 4:337252/147‑1 (MQ=255) ctgctgCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGaaa < 2:290200/148‑1 (MQ=255) tgctgcTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAAtt > 1:132102/1‑149 (MQ=255) ctgctTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAAttt < 4:291543/148‑1 (MQ=255) ctTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTcc < 8:93111/147‑1 (MQ=255) ctTTCGTCCATTTCAGGCAGAAATCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGCTTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTcc < 1:71280/148‑1 (MQ=255) tttCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGTAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTc > 1:240487/1‑149 (MQ=255) cGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTCTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGc < 8:232483/148‑1 (MQ=255) gTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGcc > 1:329418/1‑148 (MQ=255) gTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGcc > 8:65768/1‑148 (MQ=255) tCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGa > 5:133636/1‑149 (MQ=255) aTTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTTTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCt > 8:214840/1‑149 (MQ=255) aGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTgcagc < 6:195866/149‑1 (MQ=255) aGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCAACCGGG‑CCTGGAAATTTCCCTCGCCGACCTgcag > 2:221106/1‑148 (MQ=255) gCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTATTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCAc < 5:163656/149‑1 (MQ=255) aCTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGGCCCTGGAAATTTCCCTCGCCGACCTGCAGCACGAcc < 1:221106/149‑1 (MQ=255) tCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTg > 2:14727/1‑149 (MQ=255) aGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGgc < 4:58550/149‑1 (MQ=255) gCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATG‑CCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGgcgc < 7:22585/149‑1 (MQ=255) tCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCaa < 7:54126/149‑1 (MQ=255) aTGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGcc > 4:177757/1‑149 (MQ=255) tGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGccc > 2:180340/1‑149 (MQ=255) tCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCgg < 6:214079/149‑1 (MQ=255) ggCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑c < 7:65768/149‑1 (MQ=255) ggCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑c > 7:284094/1‑149 (MQ=255) gCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑c > 5:124025/1‑148 (MQ=255) ccTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGCCCTTGACCGGCGCAAGCCCGGCA‑CCAGCCgg > 2:259180/1‑149 (MQ=255) ccTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCg < 2:329418/148‑1 (MQ=255) aCGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGca > 4:328949/1‑148 (MQ=255) aCGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGca > 2:206053/1‑148 (MQ=255) ggCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCacac < 6:58761/149‑1 (MQ=255) gTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTg < 8:145303/110‑1 (MQ=255) gTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTg > 7:145303/1‑110 (MQ=255) tGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAg > 6:226649/1‑148 (MQ=255) ccaccGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCCAGCCGGCACACCACCCAGCGCCAGGAAGc < 1:206053/149‑1 (MQ=255) cTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAg < 6:124025/149‑1 (MQ=255) gCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGt < 1:336886/148‑1 (MQ=255) cGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTgg < 2:240487/149‑1 (MQ=255) gagCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGaaa > 7:75234/1‑149 (MQ=255) cATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCt < 2:132102/149‑1 (MQ=255) aTGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtata < 2:109761‑M2/148‑111 (MQ=255) tGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtata < 8:260185‑M2/147‑111 (MQ=255) tGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCttt < 8:284094/149‑1 (MQ=255) cGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGaaa > 1:246542/1‑138 (MQ=255) cGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGaaa < 2:246542/138‑1 (MQ=255) gCG‑TTGGTCGCCATTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcatgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtatacagatggtt > 1:109761‑M2/1‑30 (MQ=255) gCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCgt < 8:75234/149‑1 (MQ=255) ttGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGtt > 7:4488/1‑149 (MQ=255) tCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCg > 8:131214/1‑147 (MQ=255) gCCTTTGTCGTTGGATGCCCACCGGG‑CCTTGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCTTCGCAAGCCCGGTA‑CCAGCCGGCACACCACCCATCGCCAGGAATCCGACGATGTGGTAATCCTTTCCGGCGTGTTCGAAg < 7:214840/148‑1 (MQ=255) ccATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGc < 3:177757/149‑1 (MQ=255) cATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGcc < 7:131214/149‑1 (MQ=255) ccACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTc > 4:175852/1‑149 (MQ=255) ccACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTc > 3:284608/1‑149 (MQ=255) | AACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCG‑TTGGTCGCCATTGTCGATGGATGCCCACCGGG‑CCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCA‑CCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTC > NC_002947/2054805‑2055098 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |