New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 205492350 (0.920)3 (0.060) 3/246 NT 5.9% coding (64/1092 nt) aroC chorismate synthase
?NC_002947 = 2054952 48 (0.940)coding (93/1092 nt) aroC chorismate synthase

AACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTC  >  NC_002947/2054805‑2055098
                                                                                                                                                    |                                                                                                                                                    
aaCCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCAc                                                                                                                                                     <  5:195866‑M2/149‑2 (MQ=255)
 aCCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTATCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCAcc                                                                                                                                                    <  7:232483‑M2/149‑3 (MQ=255)
    aTCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCAccggg                                                                                                                                                 <  3:58550‑M2/149‑6 (MQ=255)
         tataCTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCAccgggc                                                                                                                                                >  1:243879‑M2/1‑139 (MQ=255)
         tataCTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCt                                                                                                                                             <  4:337252/147‑1 (MQ=255)
             ctgctgCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGaaa                                                                                                                                        <  2:290200/148‑1 (MQ=255)
              tgctgcTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAAtt                                                                                                                                      >  1:132102/1‑149 (MQ=255)
                ctgctTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAAttt                                                                                                                                     <  4:291543/148‑1 (MQ=255)
                   ctTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTcc                                                                                                                                   <  8:93111/147‑1 (MQ=255)
                   ctTTCGTCCATTTCAGGCAGAAATCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGCTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTcc                                                                                                                                   <  1:71280/148‑1 (MQ=255)
                    tttCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGTAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTc                                                                                                                                >  1:240487/1‑149 (MQ=255)
                       cGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTCTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGc                                                                                                                              <  8:232483/148‑1 (MQ=255)
                        gTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGcc                                                                                                                             >  1:329418/1‑148 (MQ=255)
                        gTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGcc                                                                                                                             >  8:65768/1‑148 (MQ=255)
                         tCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGa                                                                                                                           >  5:133636/1‑149 (MQ=255)
                            aTTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTTTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCt                                                                                                                        >  8:214840/1‑149 (MQ=255)
                                 aGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTgcagc                                                                                                                   <  6:195866/149‑1 (MQ=255)
                                 aGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCAACCGGGCCTGGAAATTTCCCTCGCCGACCTgcag                                                                                                                    >  2:221106/1‑148 (MQ=255)
                                   gCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTATTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCAc                                                                                                                 <  5:163656/149‑1 (MQ=255)
                                        aCTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCCTGGAAATTTCCCTCGCCGACCTGCAGCACGAcc                                                                                                             <  1:221106/149‑1 (MQ=255)
                                          tCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTg                                                                                                          >  2:14727/1‑149 (MQ=255)
                                                aGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGgc                                                                                                    <  4:58550/149‑1 (MQ=255)
                                                 gCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGgcgc                                                                                                  <  7:22585/149‑1 (MQ=255)
                                                    tCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCaa                                                                                                <  7:54126/149‑1 (MQ=255)
                                                       aTGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGcc                                                                                             >  4:177757/1‑149 (MQ=255)
                                                        tGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGccc                                                                                            >  2:180340/1‑149 (MQ=255)
                                                          tCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCgg                                                                                          <  6:214079/149‑1 (MQ=255)
                                                             ggCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCAc                                                                                      <  7:65768/149‑1 (MQ=255)
                                                             ggCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCAc                                                                                      >  7:284094/1‑149 (MQ=255)
                                                              gCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCAc                                                                                      >  5:124025/1‑148 (MQ=255)
                                                                    ccTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGCCCTTGACCGGCGCAAGCCCGGCACCAGCCgg                                                                               >  2:259180/1‑149 (MQ=255)
                                                                    ccTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCg                                                                                <  2:329418/148‑1 (MQ=255)
                                                                       aCGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGca                                                                             >  4:328949/1‑148 (MQ=255)
                                                                       aCGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGca                                                                             >  2:206053/1‑148 (MQ=255)
                                                                         ggCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCacac                                                                          <  6:58761/149‑1 (MQ=255)
                                                                                 gTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTg                                                                                                          <  8:145303/110‑1 (MQ=255)
                                                                                 gTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTg                                                                                                          >  7:145303/1‑110 (MQ=255)
                                                                                       tGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAg                                                             >  6:226649/1‑148 (MQ=255)
                                                                                            ccaccGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCCAGCCGGCACACCACCCAGCGCCAGGAAGc                                                        <  1:206053/149‑1 (MQ=255)
                                                                                                  cTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAg                                                 <  6:124025/149‑1 (MQ=255)
                                                                                                     gCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGt                                               <  1:336886/148‑1 (MQ=255)
                                                                                                      cGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTgg                                             <  2:240487/149‑1 (MQ=255)
                                                                                                         gagCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGaaa                                          >  7:75234/1‑149 (MQ=255)
                                                                                                             cATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCt                                      <  2:132102/149‑1 (MQ=255)
                                                                                                              aTGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtata                                        <  2:109761‑M2/148‑111 (MQ=255)
                                                                                                               tGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcttgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtata                                        <  8:260185‑M2/147‑111 (MQ=255)
                                                                                                               tGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCttt                                    <  8:284094/149‑1 (MQ=255)
                                                                                                                    cGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGaaa                                          >  1:246542/1‑138 (MQ=255)
                                                                                                                    cGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGaaa                                          <  2:246542/138‑1 (MQ=255)
                                                                                                                      gCGTTGGTCGCCATTGTCGATGGATGCCCAccgggccatggctctcgccagcggtggtgacagtgaacagcatgccgtaggtattgccggacatggacgctccgcgagttctgcctgaaatggacgaaagcagcagtatacagatggtt                               >  1:109761‑M2/1‑30 (MQ=255)
                                                                                                                      gCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCgt                             <  8:75234/149‑1 (MQ=255)
                                                                                                                          ttGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGtt                          >  7:4488/1‑149 (MQ=255)
                                                                                                                              tCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCg                        >  8:131214/1‑147 (MQ=255)
                                                                                                                                gCCTTTGTCGTTGGATGCCCACCGGGCCTTGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCTTCGCAAGCCCGGTACCAGCCGGCACACCACCCATCGCCAGGAATCCGACGATGTGGTAATCCTTTCCGGCGTGTTCGAAg                     <  7:214840/148‑1 (MQ=255)
                                                                                                                                 ccATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGc                   <  3:177757/149‑1 (MQ=255)
                                                                                                                                  cATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGcc                  <  7:131214/149‑1 (MQ=255)
                                                                                                                                                  ccACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTc  >  4:175852/1‑149 (MQ=255)
                                                                                                                                                  ccACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTc  >  3:284608/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCCCGGCACCAGCCGGCACACCACCCAGCGCCAGGAAGCCGACGAGGTGGAAATCCTTTCCGGCGTGTTCGAAGGCCGCACCACCGGCTGCTC  >  NC_002947/2054805‑2055098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.