| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2076009 = | 57 (1.050) | 4 (0.080) | 3/246 | NT | 6.3% | coding (525/879 nt) | PP_5479 | LysR family transcriptional regulator |
| ? | NC_002947 | 2076057 = | 65 (1.270) | coding (573/879 nt) | PP_5479 | LysR family transcriptional regulator | |||||
AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2076162‑2076009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgaAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCGGC > NC_002947/2076057‑2076204 AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCTCCA < 2:305107/149‑1AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCA < 4:106251/149‑1 TGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCAGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGC > 3:141690/1‑148 ACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTC > 4:184133/1‑142 TTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGG > 6:325183/1‑149 TTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGA > 5:72741/1‑142 TTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGA < 6:72741/142‑1 AGGCGAAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCG > 8:304784/1‑149 AAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCGGC < 3:184133/149‑1 AACATGCCCGATCTCGAACTGCACCCTGCGCTGCAACCCCACCGCCTGAAACGCCTCGTCAGTCTGTCGTCGCGCCCCGGTGCCTTCGGGGAAGTCCACCAACACTTCGCCTGCCAGGTCAGCCAGCGCCAGCTGTGCCCTGCCCGCCAGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2076162‑2076009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgaAGTGTTGGTGGACTTCCCCGAAGGCACCGGGGCGCGACGACAGACTGACGAGGCGTTTCAGGCGGTGGGGTTGCAGCGCAGGGTGCAGTTCGAGATCGGGCATGTTCGTCTGGTGGAGAAATTCGTGCAGCGGGGCATGGCCGTCGGC > NC_002947/2076057‑2076204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |