New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2242860	53 (0.980)	3 (0.060)	3/250	NT	5.3%	coding (433/540 nt)	PP_1978	TetR family transcriptional regulator
	?	NC_002947	= 2242892	56 (1.080)					coding (465/540 nt)	PP_1978	TetR family transcriptional regulator

AGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2242708‑2242860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCAGCCCCCCAACCATCAGGGCCAGGTCGGCCAGCGCTTTGTCGGCATCCTCAGGGCGGTCGACCATCGCGGCAGTCATCAACTCGATGTGCTCGGCCAGCACCTCGCGGAAGACCTCCGGCAGGCGCTGCATTTCGCCCAACGCGT  <  NC_002947/2242892‑2242747                                                                                                                                                                                                                                                                                                             AGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAA                                                                                                                                                        <  5:340718/149‑1     CCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGC                                                                                                                                                    >  6:140841/1‑149     CCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGC                                                                                                                                                    <  7:133000/149‑1                                        ACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCCAGCCCCCCAACCATCAGGGCCAGGTCGGCCAGCG                                                                                                                 <  2:59162/149‑1                                                                           TTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCCAGCCCCCCAACCATCAGGGCCAGGTCGGCCAGCGCTTTGTCG                                                                                                         <  1:65990/122‑1                                                                           TTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGCCAGCCCCCCAACCATCAGGGCCAGGTCGGCCAGCGCTTTGTCG                                                                                                         >  2:65990/1‑122                                                                                                                                                     AGCGCCAGCCCCCCAACCATCAGGGCCAGGTCGGCCAGCGCTTTGTCGGCATCCTCAGGGCGGTCGACCATCGCGGCAGTCATCAACTCGATGTGCTCGGCCAGCACCTCGCGGAAGACCTCCGGCAGGCGCTGCATTTCGCCCAACGC    <  4:329467/149‑1                                                                                                                                                       CGCCAGCCCCCCAACCATCAGGGCCAGGTCGGCCAGCGCTTTGTCGGCATCCTCAGGGCGGTCGACCATCGCGGCAGTCATCAACTCGATGTGCTCGGCCAGCACCTCGCGGAAGACCTCCGGCAGGCGCTGCATTTCGCCCAACGCGT  >  2:224396/1‑149                                                                                                                                                                                                                                                                                                             AGCACCGGGACTGCGAAGTACATGCTTGCCCGCTGCCTAACGCGTTGGGCGAAATGCAGCGCCTGCCGGAGGTCTTCCGCGAGGTGCTGGCCGAGCACATCGAGTTGATGACTGCCGCGATGGTCGACCGCCCTGAGGATGCCGACAAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2242708‑2242860 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCAGCCCCCCAACCATCAGGGCCAGGTCGGCCAGCGCTTTGTCGGCATCCTCAGGGCGGTCGACCATCGCGGCAGTCATCAACTCGATGTGCTCGGCCAGCACCTCGCGGAAGACCTCCGGCAGGCGCTGCATTTCGCCCAACGCGT  <  NC_002947/2242892‑2242747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.