New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295506 =	51 (0.940)	4 (0.080)	4/250	NT	7.9%	intergenic (+51/‑72)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
	?	NC_002947	2295569 =	44 (0.850)					intergenic (+114/‑9)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein

GGGCATGCGCTGGCAGTACGACCGATGCGGAAATGGCGGATGCGGCAATAACCGGGAAGAGATTGAAGTTCATCTGGGCTTACCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2295650‑2295506 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCC  >  NC_002947/2295569‑2295715                                                                                                                                                                                                                                                                                                      GGGCATCCGCTCGCAGTACGACCGATGCCGAAATCGACGATCCGGCAATAACCGGGAACAGATTGAACTTCATCTGGGCTTACCTCGACGGCGGTGGTTTGAAGGTGGCCCTTTTGGTCCTTGGGTCAAACTTACGCCGCCGAGaccg                                                                                                                                                  >  4:261841/1‑144                                                                                   CCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGC                                                               >  3:195767/1‑149                                                                                     TCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCC                                                              >  6:344087/1‑148                                                                                          GGCGGTGGTTTGACGGTGGCCGTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCGGACAG                                                         <  4:195767/148‑1                                                                                                                            GGTCAAACTTACGCCGCCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGC                      <  5:344087/149‑1                                                                                                                                              GAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGC     <  8:123490/148‑1                                                                                                                                                 GTAAGCCCAGATGCACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACCCCGAGCAGTACCTGCGCCAGAGCGCC  >  8:42985/1‑148                                                                                                                                                                                                                                                                                                      GGGCATGCGCTGGCAGTACGACCGATGCGGAAATGGCGGATGCGGCAATAACCGGGAAGAGATTGAAGTTCATCTGGGCTTACCTCGACGGCGGTGGTTTGACGGTGGCCCTTTTGGGCCTTGGGTCAAACTTACGCCGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2295650‑2295506 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaggTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCC  >  NC_002947/2295569‑2295715

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.