New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2295506 =	51 (0.940)	4 (0.080)	4/250	NT	7.9%	intergenic (+51/‑72)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
	?	NC_002947	2295569 =	44 (0.850)					intergenic (+114/‑9)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein

CGTGGTGATACGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCC  >  NC_002947/2295359‑2295649                                                                                                                                                    |                                                                                                                                                ggcgctctggcgcaggtactgctcggggtagctgtgggtggcagaagccttgctgctgtcggcatgggcatgcgctggcagtacgaccgatgcggaaatggcggatgcggcaataaccgggaagagattgaagtgcatctgggcttac                                                                                                                                                 >  8:42985‑M1/148‑148 (MQ=255)    gctctggcgcaggtactgctcggtgtagctgtgggtggcagaagccttgctgctgtcggcatgggcatgcgctggcagtacgaccgatgcggaaatggcggatgcggcaataaccgggaagagattgaagttcatctgggcttaCCTc                                                                                                                                              <  8:123490‑M1/4‑1 (MQ=255)         tACGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCggcggc                                                                                                                                        <  2:337089/149‑1 (MQ=255)         tACGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCggcggc                                                                                                                                        <  7:16777/149‑1 (MQ=255)          aCGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGgcggcg                                                                                                                                       >  8:211008/1‑149 (MQ=255)           cGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGgcggcg                                                                                                                                       <  7:131127/148‑1 (MQ=255)                 gATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGttt                                                                                                                                <  8:48608/149‑1 (MQ=255)                     gctcggtgtagctgtgggtggcagaagccttgctgctgtcggcatgggcatgcgctggcagtacgaccgatgcggaaatggcggatgcggcaataaccgggaagagattgaagttcatctgggcttaCCTCGGCGGCGTAAGTTTGAcc                                                                                                                            <  5:344087‑M1/22‑1 (MQ=255)                      gcgcAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGAcc                                                                                                                            >  6:166445/1‑148 (MQ=255)                         cAGTGACAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTGGACCCAAg                                                                                                                        <  2:50501/149‑1 (MQ=255)                          aGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAgg                                                                                                                       >  8:300912/1‑149 (MQ=255)                            tGGGAAGCTGCTGGAGACGGTGCAGACGCTGATGCAGTATGCACCCTCGGACCTGAAGTTCATCGAGTGATATCGTTCAGCGTGATATTCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGc                                                                                                                      <  5:150166/148‑1 (MQ=255)                              gCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGccc                                                                                                                    <  7:211008/148‑1 (MQ=255)                                aaGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCaa                                                                                                                  >  3:281977/1‑148 (MQ=255)                                   ctgctgGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAgg                                                                                                              <  7:176066/149‑1 (MQ=255)                                       tgGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCa                                                                                                          >  3:251301/1‑149 (MQ=255)                                         gagaCGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCAc                                                                                                         <  4:309071/148‑1 (MQ=255)                                              ggTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGcc                                                                                                                     <  1:156940/131‑1 (MQ=255)                                              ggTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGcc                                                                                                                     >  2:156940/1‑131 (MQ=255)                                                       gCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCAccgcc                                                                                          >  4:252495/1‑149 (MQ=255)                                                        ctgtccgcatgggcatgcgctggcagtacgaccgatgcggaaatggcggatgcggcaataaccgggaagagattgaagttcatctgggcttaCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAACGGCCACCGTCAAACCAccgcc                                                                                          <  4:195767‑M1/56‑1 (MQ=255)                                                             ggcatgggcatgcgctggcagtacgaccgatgcggaaatggcggatgcggcaataaccgggaagagattgaagttcatctgggcttaCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGa                                                                                     >  6:344087‑M1/88‑148 (MQ=255)                                                             gCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATTGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAg                                                                                    >  8:282155/1‑149 (MQ=255)                                                             gCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAg                                                                                    >  2:198605/1‑149 (MQ=255)                                                              gcatgggcatgcgctggcagtacgaccgatgcggaaatggcggatgcggcaataaccgggaagagattgaagttcatctgggcttaCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAgg                                                                                   >  3:195767‑M1/87‑149 (MQ=255)                                                                     cACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGccc                                                                            <  6:70832/149‑1 (MQ=255)                                                                        ccTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGcc                                                                             >  7:28873/1‑145 (MQ=255)                                                                                   cagctCATCCACTGATAACCATCACCCTGATAATCGGTACTGCTGCAACCAATCTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAt                                                              <  4:251301/145‑1 (MQ=255)                                                                                      ttCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAtctc                                                           >  7:123490/1‑149 (MQ=255)                                                                                        cATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCtt                                                         >  7:132277/1‑149 (MQ=255)                                                                                          tCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTcc                                                       >  3:77181/1‑149 (MQ=255)                                                                                          tCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTcc                                                       >  7:310009/1‑149 (MQ=255)                                                                                                    tCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGcc                                                                                                           <  8:131031/87‑1 (MQ=255)                                                                                                    tCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGcc                                                                                                           >  7:131031/1‑87 (MQ=255)                                                                                                    tCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGc                                             >  3:46854/1‑149 (MQ=255)                                                                                                     cGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGc                                             <  7:300912/148‑1 (MQ=255)                                                                                                      gATCAGCGTGATAATTGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGcc                                            <  7:282155/148‑1 (MQ=255)                                                                                                      gATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTc                                                        >  3:16189/1‑136 (MQ=255)                                                                                                      gATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTc                                                        <  4:16189/136‑1 (MQ=255)                                                                                                       aTCAGCGTGATAATCGGAACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGAAAGTTAGACCCAAGGCCCAAAACCGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGc                                          <  5:166445/149‑1 (MQ=255)                                                                                                          aGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATc                                       >  5:190099/1‑149 (MQ=255)                                                                                                                aTAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCAt                                 >  3:35486/1‑149 (MQ=255)                                                                                                                  aaTCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAt                                                              >  3:210038/1‑118 (MQ=255)                                                                                                                  aaTCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAt                                                              <  4:210038/118‑1 (MQ=255)                                                                                                                   aTCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCAttt                               <  8:132277/148‑1 (MQ=255)                                                                                                                    tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGAcc                                                                                                                            >  6:107163/1‑54 (MQ=255)                                                                                                                    tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGAcc                                                                                                                            <  5:107163/54‑1 (MQ=255)                                                                                                                                cAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTa                 >  1:306438/1‑149 (MQ=255)                                                                                                                                 aaTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTAc                >  3:232617/1‑149 (MQ=255)                                                                                                                                  aTGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACt               >  1:118232/1‑149 (MQ=255)                                                                                                                                    gAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGc             >  3:261841/1‑149 (MQ=255)                                                                                                                                      aTTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCa           <  2:118232/149‑1 (MQ=255)                                                                                                                                      aTTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCa           <  3:252495/149‑1 (MQ=255)                                                                                                                                         tttGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAgc         <  2:64056/148‑1 (MQ=255)                                                                                                                                           tgcgtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAgcgc       <  2:297522/148‑1 (MQ=255)                                                                                                                                             cgtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatg    <  8:28873/149‑1 (MQ=255)                                                                                                                                             cgtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcat     <  4:46854/148‑1 (MQ=255)                                                                                                                                               tgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgcc  <  4:281977/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                CGTGGTGATACGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCC  >  NC_002947/2295359‑2295649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.