New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2297159 =40 (0.740)3 (0.060) 3/246 NT 7.5% coding (2963/3645 nt) sbcC exonuclease subunit SbcC
?NC_002947 2297208 = 36 (0.700)coding (2914/3645 nt) sbcC exonuclease subunit SbcC

CTGGACGATGCCGGCCTCGATCGCCTGCTGGCCATGGATGACGCGCAAGTCAATGAATTGCGCCAGCGTTTGCAAGGCGCGGAAAAAGCCATCGAGCAGGGCCGCGTCCTGCTGCAGGAGCGCGAACAGCGCCTGCAGCATCACGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2297307‑2297159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcggcCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGCAACTGTTG  >  NC_002947/2297208‑2297355
                                                                                                                                                                                                                                                                                                         
CTGGACGATGCCGGCCTCGATCGCCTGCTGGCCATGGATGACGCGCAAGTCAATGAATTGCGCCAGCGTTTGCAAGGCGCGGAAAAAGCCATCGAGCAGGGCCGCGTCCTGCTGCAGGAGCGCGAACAGCGCCTGCAGCATCACGCGGC                                                                                                                                                      <  4:72828/149‑1
                                                                                         CATCGAGCAGGGCCGCGTCCTGCTGCAGGAGCGCGAACAGCGCCTGCAGCATCACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGCTCGAGGCCG                                                             >  8:77266/1‑149
                                                                                                  GGGCCGCGTCCTGCTGCAGGAGCGCGAACAGCGCCTGCAGCATCACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTC                                                     >  3:262876/1‑148
                                                                                                  GGGCCGCGTCCTGCTGCAGGAGCGCGAACAGCGCCTGCAGCATCACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTC                                                     <  4:262876/148‑1
                                                                                                                                              ACGCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGCGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGCAA        <  8:251900/149‑1
                                                                                                                                                GCGGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGCAACT      <  5:348843/149‑1
                                                                                                                                                  GGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGG                        <  5:40801/129‑1
                                                                                                                                                  GGCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGG                        >  6:40801/1‑129
                                                                                                                                                   GCCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCTGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGCAACTGTT   <  1:309407/149‑1
                                                                                                                                                    CCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGCAACTGTTG  >  4:329398/1‑149
                                                                                                                                                                                                                                                                                                         
CTGGACGATGCCGGCCTCGATCGCCTGCTGGCCATGGATGACGCGCAAGTCAATGAATTGCGCCAGCGTTTGCAAGGCGCGGAAAAAGCCATCGAGCAGGGCCGCGTCCTGCTGCAGGAGCGCGAACAGCGCCTGCAGCATCACGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2297307‑2297159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcggcCCTGCTCGATGGCTTTTTCCGCGCCTTGCAAACGCTGGCGCAATTCATTGACTTGCGCGTCATCCATGGCCAGCAGGCGATCGAGGCCGGCATCGTCCAGTTCCGGATGCTCGCTGCGCCACTGGGCGATCTGGGCCTGCAACTGTTG  >  NC_002947/2297208‑2297355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.