New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2308477	46 (0.850)	3 (0.060)	3/246	NT	6.2%	coding (593/957 nt)	PP_2031	hypothetical protein
	?	NC_002947	= 2308521	48 (0.940)					coding (549/957 nt)	PP_2031	hypothetical protein

CAGCAGGCCGGCGGCAGGCAACGCGTGGTCGAGCGGGTCGGATACCGGCAGCAACAGCAGGTCGCAATGCCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2308326‑2308477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggcCGACAGCCTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGCCCCGGCAGCCTGGCCATCGTGATCTGCGATGAACGCTCGCTCAGCGCCCAGGTGGA  <  NC_002947/2308521‑2308420                                                                                                                                                                                                                                                                CAGCAGGCCGGCGGCAGGCAACGCGATGTCGAGCGGGTCGGATACCGGCAGCAACAGCAGGTAGCAATGCCGAGAGAGCATGGACAGGTGCTGTTCCACCAGGGCGCTGAGCGAGCGTTCATCGCAGATAACGATGGCCAGGCTGCAGG                                                                                                           >  7:312428/1‑149  AGCAGGCCGGCGGCAGGCAACGCGTGGTCGAGCGGGTCGGATACCGGCAGCAACAGCAGGTCGCAATGCCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGG                                                                                                          <  8:189225/149‑1       ggCGGCGTCAGGCAACGCGTGGGCGAGCGGGTCGTATACCGGGAGCATCAGGAGGTCGCAATGCCGTGAGAGCATTGCCAGGTGCTGTTCCACGTGGGCGATGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGCtca                                                                                                     <  8:312428/147‑4                              CGAGCGGGTCGGATACCGGCAGCAACAGCAGGTCGCAATGCCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGC                                                                                                        <  7:33723/123‑1                              CGAGCGGGTCGGATACCGGCAGCAACAGCAGGTCGCAATGCCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGC                                                                                                        >  8:33723/1‑123                                                        AGCAGGTCGCAATGCCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGCCGACAGCCTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGCCCCGGC                                                    <  4:160384/149‑1                                                                      CCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGCCGACAGCCTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGCCCCGG                                                     <  7:129693/134‑1                                                                      CCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGCCGACAGCCTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGCCCCGG                                                     >  8:129693/1‑134                                                                                                                                                   CGGGGCCGACAGCCTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGCCCCGGCAGCCTGGCCATCGTGATCTGCGATGAACGCTCGCTCAGCGCCCAGGTGGA  >  3:178252/1‑108                                                                                                                                                   CGGGGCCGACAGCCTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGCCCCGGCAGCCTGGCCATCGTGATCTGCGATGAACGCTCGCTCAGCGCCCAGGTGGA  <  4:178252/108‑1                                                                                                                                                                                                                                                                CAGCAGGCCGGCGGCAGGCAACGCGTGGTCGAGCGGGTCGGATACCGGCAGCAACAGCAGGTCGCAATGCCGTGAGAGCATGGCCAGGTGCTGTTCCACCTGGGCGCTGAGCGAGCGTTCATCGCAGATCACGATGGCCAGGCTGCCGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2308326‑2308477 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggcCGACAGCCTCGGCCTGGCCCTGCGCCGCGCCCGCGAAGTGCTGCGCCCCGGCAGCCTGGCCATCGTGATCTGCGATGAACGCTCGCTCAGCGCCCAGGTGGA  <  NC_002947/2308521‑2308420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.