| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2417322 = | 41 (0.760) | 4 (0.080) | 4/248 | NT | 8.7% | coding (357/1764 nt) | PP_2119 | ABC transporter permease/ATP‑binding protein |
| ? | NC_002947 | 2417357 = | 45 (0.870) | coding (392/1764 nt) | PP_2119 | ABC transporter permease/ATP‑binding protein | |||||
TGGTGAGCTTGGGGTTGGTGATGAACAGCAATACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2417470‑2417322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcggACACCACCTTGCTGCAATCAGTGATCGGTTCATCGCTGTCGATGTTCCTGCGCAACGCGCTGATGGTCATTGGCGGTGTGGTATTGCTGTTCATCACCAACCCCAAGCTCACCAGCATCGTGGTGGTAACGCTGCCGCTGGTGTT > NC_002947/2417357‑2417501 TGGTGAGCTTGGGGTTGGTGATGAACAGCAATACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CTGCGG > 3:186866/1‑149 CAGCAATACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CT < 1:248523/120‑1 CAGCAATACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CT > 2:248523/1‑120 CAATACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CTGCG > 1:70095/1‑120 CAATACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CTGCG < 2:70095/120‑1 TACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAG‑C‑TCCGAGATCCAGTCTCGGCTGACTGCGGACACCACCTTGCTGCAATCAGTGATCGGT < 5:186464/147‑1 TACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAG‑C‑TCCGAGATCCAGTCTCGGCTGACTGCGGACACCACCTTGCTGCAATCAGTGATCGGT > 6:186464/1‑147 TCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CTGCGGACACCACCTTGCTGCAATCAGTGATCGGTTCATCGCTGACGATGTTCCTGCGCAACGCGCTGATGGTCATTGGCGGTGTGGTATTGCTGTTCATCACCAACCCCAAGCTCAC > 2:248007/1‑148 GCAGTCAGCCGAGACTGGATCTCGG‑AG‑CTGCGGACACCACCTTGCTGCAATCAGTGATCGGTTCATCGCTGACGATGTTCCTGCGCAACGCGCTGATGGTCATTGGCGGTGTGGTATTGCTGTTCATCACCAACCCCAAGCTCACCAGC < 1:248007/149‑1 CGGACACCACCTTGCTGCAATCAGTGATCGGTTCATCGCTGTCGATGTTCCTGCGCAACGCGCTGATGGTCATTGGCGGTGTGGTATTGCTGTTCATCACCAACCCCAAGCTCACCAGCATCGTGGTGGTAACGCTGCCGCTGGTGTT < 6:7832/148‑1 TGGTGAGCTTGGGGTTGGTGATGAACAGCAATACCACACCGCCAATGACCATCAGCGCGTTGCGCAGGAACATCGACAGCGATGAACCGATCACTGATTGCAGCAAGGTGGTGTCCGCAGTCAGCCGAGACTGGATCTCGG‑AG‑CTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2417470‑2417322‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcggACACCACCTTGCTGCAATCAGTGATCGGTTCATCGCTGTCGATGTTCCTGCGCAACGCGCTGATGGTCATTGGCGGTGTGGTATTGCTGTTCATCACCAACCCCAAGCTCACCAGCATCGTGGTGGTAACGCTGCCGCTGGTGTT > NC_002947/2417357‑2417501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |