New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2873269 =	51 (0.940)	4 (0.080)	4/254	NT	7.3%	coding (49/474 nt)	cigR	membrane protein
	?	NC_002947	2873374 =	52 (0.980)					coding (154/474 nt)	cigR	membrane protein

CCGTGCCAGTCATTGCCGCCGGCGCTCTGCTTGTGGCCGCCCGAATTGCCCTGGCCCTGGGCGTGCGGCGCCTGGCCCTTGCCGTGCCCCTGACCTTGGCCCTGGCCTTTGCCATTACCCGGGTCGGCGAGCACCGGACCAGAGGCCAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2873420‑2873269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGCCACCGCAGCTACTGGAGCC  >  NC_002947/2873374‑2873485                                                                                                                                                                                                                                                                          CCGGGCCCGTCATTGCCGCCGGCGCTCGGCTTGTGGCCGCCCGAATTGCCCTGGCCCGGGGCGTGCGGCGCCGGGCCCTGGCGGGGCCCCTGACCTTGGCCCTGGCCTTT‑CCATTACCCGGGTCGGCGAGCACCGGACCAGAGGCCAAG                                                                                                                    <  5:178845/149‑1                                         CCGAATTGCCCTGGCCCTGGGCGTGCGGCGCCTGGCCCTTGCCGTGCCCCTGACCTTGGCCCTGGCCTTTGCCATTACCCGGGTCGGCGAGCACCGGACCAGAGGCCAAGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAAT                                                                              >  5:200967/1‑148                                          CGAATTGCCCTGGCCCTGGGCGTGCGGCGCCTGGCCCTTGCCGTGCCCCTGACCTTGGCCCTGGCCTTTGCCATTACCCGGGTCGGCGAGCACCGGACCAGAGGCCAAGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATG                                                                             >  8:158602/1‑148                                                                TGCGGCGCCTGGCCCTTGCCGTGCCCCTGACCTTGGCCCTGGCCTTTGCCATTACCCGGGTCGGCGAGCACCGGACCAGAGGCCAAGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATC                                                      <  7:158602/149‑1                                                                                                                     ACCCGGGTCGGCGAGCACCGGACAAGAGGCCAAGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGCCACCGCAGCTACTGGAGCC  <  6:200967/148‑1                                                                                                                                                                                                                                                                          CCGTGCCAGTCATTGCCGCCGGCGCTCTGCTTGTGGCCGCCCGAATTGCCCTGGCCCTGGGCGTGCGGCGCCTGGCCCTTGCCGTGCCCCTGACCTTGGCCCTGGCCTTTGCCATTACCCGGGTCGGCGAGCACCGGACCAGAGGCCAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2873420‑2873269 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcAATTCGGGCGGCCACAAGCAGAGCGCCGGCGGCAATGACTGGCACGGCGGCCCGTCCATCGACCGTGGCGATGTACTGGGCATCCTCGGTGGCCACCGCAGCTACTGGAGCC  >  NC_002947/2873374‑2873485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.