New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2873269 =	51 (0.940)	4 (0.080)	4/254	NT	7.3%	coding (49/474 nt)	cigR	membrane protein
	?	NC_002947	2873374 =	52 (0.980)					coding (154/474 nt)	cigR	membrane protein

CCTTGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGG  >  NC_002947/2873127‑2873405                                                                                                                                               |                                                                                                                                         cctTGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttgg                                                                                                                                    >  8:137359/1‑149 (MQ=255)      tCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCctc                                                                                                                                <  6:260675/148‑1 (MQ=255)      tCAGCCATCCCTGCTGAGGCTGCTGCAAGGGAAGCAGGCGTGCGCACCGTCTTTAGTGTGGTGCAACCTCTCTCGCAAAGGATGCTCACATGGCCAGATCACCATTCATGACAGCCTTTGTCACCTCATTGGCGGTGGCCTTGGCctc                                                                                                                                <  8:248498/148‑1 (MQ=255)            aTCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCg                                                                                                                         <  3:41447/149‑1 (MQ=255)            aTCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCg                                                                                                                         >  6:158040/1‑149 (MQ=255)               ccTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTg                                                                                                                      >  3:330250/1‑149 (MQ=255)                             tgcAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCggg                                                                                                        >  4:73917/1‑149 (MQ=255)                               ggctccagtagctgcggtggccaccgaggatgcccagtacatcgccacggtcgatggacgggccgccgtgccagtcattgccgccggcgctctgcttgtggccgcccgaattGCCTTGGCCTCTTGTCCGGTGCTCGCCGACCCGGGt                                                                                                       <  6:200967‑M1/36‑1 (MQ=255)                               cAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttgg                                                                                                                                    <  8:241483/119‑1 (MQ=255)                               cAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGt                                                                                                       >  2:197746/1‑148 (MQ=255)                                  gTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATg                                                                                                   <  5:158040/149‑1 (MQ=255)                                   tGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGc                                                                                                                     <  3:10746/130‑1 (MQ=255)                                   tGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGc                                                                                                                     >  4:10746/1‑130 (MQ=255)                                   tGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATgg                                                                                                  <  7:137359/149‑1 (MQ=255)                                       gCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCTATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCAGGTAATGGCaaa                                                                                              <  2:31777/149‑1 (MQ=255)                                        cAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAg                                                                                             <  3:244920/149‑1 (MQ=255)                                           gCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGc                                                                                           >  3:120018/1‑148 (MQ=255)                                                 gcACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGcc                                                                                    <  4:330250/149‑1 (MQ=255)                                                 gcACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGACAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCACAGGCCAGGGc                                                                                     >  4:8737/1‑148 (MQ=255)                                                   aCCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCaa                                                                                  <  3:73917/149‑1 (MQ=255)                                                              tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttggc                                                                                                                                   >  7:230250/1‑89 (MQ=255)                                                              tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGtggccttggc                                                                                                                                   <  8:230250/89‑1 (MQ=255)                                                              tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCa                                                                       >  4:191229/1‑149 (MQ=255)                                                              tgtgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCa                                                                       >  1:27737/1‑149 (MQ=255)                                                                tgGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACg                                                                     <  1:197746/149‑1 (MQ=255)                                                                   ggCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAg                                                                            <  7:243005/139‑1 (MQ=255)                                                                   ggCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAg                                                                            >  8:243005/1‑139 (MQ=255)                                                                           ctcGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAg                                                          <  3:191229/149‑1 (MQ=255)                                                                                   gatggacgggccgccgtgccagtcattgccgccggcgctctgcttgtggccgcccgaattGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCa                                                  <  7:158602‑M1/89‑1 (MQ=255)                                                                                         gCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGcc                                              >  2:202456/1‑147 (MQ=255)                                                                                         gCTCAAATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGcc                                              >  6:99302/1‑147 (MQ=255)                                                                                           tCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACgg                                                                    <  6:93057/123‑1 (MQ=255)                                                                                             acaTGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCccagggc                                        >  1:163695/1‑149 (MQ=255)                                                                                             acaTGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCccagg                                          <  1:202456/147‑1 (MQ=255)                                                                                                  gCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAgg                                                                           <  6:213123/109‑1 (MQ=255)                                                                                                  gCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAgg                                                                           >  5:213123/1‑109 (MQ=255)                                                                                                    cAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGt                                                                                                       <  5:307078/79‑1 (MQ=255)                                                                                                    cAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGt                                                                                                       >  6:307078/1‑79 (MQ=255)                                                                                                    cAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTCCTCGCCGAACAGGGTAATGGCGAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCcagggccagggc                                  >  5:88717/1‑148 (MQ=255)                                                                                                     aGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCaa                                >  3:195085/1‑149 (MQ=255)                                                                                                          cattgccgccggcgctctgcttgtggccgcccgaattGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCg                            >  8:158602‑M1/38‑148 (MQ=255)                                                                                                           ccAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCggg                          >  1:93614/1‑149 (MQ=255)                                                                                                           ccAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCggg                          <  4:120018/149‑1 (MQ=255)                                                                                                           ccAATCATGACAGCCGTTGTCACCTCATTGGCCGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCAACGGCCAGGGCAATTCggg                          >  3:71412/1‑149 (MQ=255)                                                                                                           attgccgccggcgctctgcttgtggccgcccgaattGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCgg                           >  5:200967‑M1/37‑148 (MQ=255)                                                                                                               tCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGggcggc                      <  3:8737/149‑1 (MQ=255)                                                                                                                 aTGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGCCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCca                    >  7:242050/1‑149 (MQ=255)                                                                                                                  tGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATgg                                                                                                  >  1:193691/1‑70 (MQ=255)                                                                                                                  tGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATgg                                                                                                  <  2:193691/70‑1 (MQ=255)                                                                                                                        ccGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAg                >  8:36570/1‑146 (MQ=255)                                                                                                                        ccGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCag             <  7:36570/149‑1 (MQ=255)                                                                                                                          gTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCagag           >  6:130258/1‑149 (MQ=255)                                                                                                                                aCCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCcgg     >  3:218527/1‑149 (MQ=255)                                                                                                                                  cTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCcggcg   >  6:298276/1‑149 (MQ=255)                                                                                                                                   tCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCcggcgg  >  6:19147/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                         CCTTGTCAGCCATCCCTGCTGAGGCTGCTGCAAGTGAAGCAGGCGTGCGCACCGTCTATAGTGTGGGGCAACCTCTCGCGCAAAGGATGCTCACATGGCCAGATCACCAATCATGACAGCCGTTGTCACCTCATTGGCGGTGGCCTTGGCCTCTGGTCCGGTGCTCGCCGACCCGGGTAATGGCAAAGGCCAGGGCCAAGGTCAGGGGCACGGCAAGGGCCAGGCGCCGCACGCCCAGGGCCAGGGCAATTCGGGCGGCCACAAGCAGAGCGCCGGCGG  >  NC_002947/2873127‑2873405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.