| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2931543 = | 60 (1.110) | 3 (0.060) | 3/244 | NT | 5.8% | coding (2559/4890 nt) | PP_2566 | leucine‑rich repeat‑containing protein |
| ? | NC_002947 | 2931600 = | 42 (0.830) | coding (2502/4890 nt) | PP_2566 | leucine‑rich repeat‑containing protein | |||||
CGGGCTGCCGGACAGCGCGCTTGAAGAGTTGCTTGCCAACATCAGCAACGCCGAACGGGAACGTCTGACAAACGGACGAGTGCCGCTTCG‑CATTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTCCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2931693‑2931543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctcggcAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCCGGCAGCCCGGGAAACTGCCGGGCGAGGGTTTGTGCAGTGGGTGGGTGTGTGGGACGGCGTCTT > NC_002947/2931600‑2931747 CGGGCTGCCGGACAGCGCGCTTGAAGAGTTGCTTGCCAACATCAGCAACGCCGAACGGGAACGTCTGACAAACGGACGAGTGCCGCTTCG‑CATTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTC < 7:17815/145‑1CGGGCTGCCGGACAGCGCGCTTGAAGAGTTGCTTGCCAACATCAGCAACGCCGAACGGGAACGTCTGACAAACGGACGAGTGCCGCTTCG‑CATTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTC > 8:17815/1‑145 GGGCTGCCGGACAGCGCGCTTGAAGAGTTGCTTGCCAACATCAGCAACGCCGAACGGGAACGTCTGACAAACGGACGAGTGCCGCTTCGTCATTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTCCTCG < 1:99136/149‑1 GGCTGCCGGACAGCGCGCTTGAAGAGTTGCTTGCCAACATCAGCAACGCCGAACGGGAACGTCTGACAAACGGACGAGTGCCGCTTCG‑CATTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTCCTCGGC < 4:184276/149‑1 TTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACT > 3:97955/1‑127 TTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACT < 4:97955/127‑1 CCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTCCTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCCGGCAGCCC > 8:251627/1‑149 CTCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCCGGCAGCCCGGGAAACTGCCGGGCGAGGGTTTGTGCAGTGGGTGGGTGTGTGGGACGGC > 1:15152/1‑149 TCGGCAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCCGGCAGCCCGGGAAACTGCCGGGCGAGGGTTTGTGCAGTGGGTGGGTGTGTGGGACGGCG > 3:127378/1‑149 CAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCCGGCAGCCCGGGAAACTGCCGGGCGAGGGTTTGTGCAGTGGGTGGGTGTGTGGGACGGCGTCTT > 5:141439/1‑149 CGGGCTGCCGGACAGCGCGCTTGAAGAGTTGCTTGCCAACATCAGCAACGCCGAACGGGAACGTCTGACAAACGGACGAGTGCCGCTTCG‑CATTGCCGAGGAAGCACGCCTTCTGCAAGCTCGAGCGCGGCTTGATCGTGCCCTCCTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2931693‑2931543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctcggcAATGCGAAGCGGCACTCGTCCGTTTGTCAGACGTTCCCGTTCGGCGTTGCTGATGTTGGCAAGCAACTCTTCAAGCGCGCTGTCCGGCAGCCCGGGAAACTGCCGGGCGAGGGTTTGTGCAGTGGGTGGGTGTGTGGGACGGCGTCTT > NC_002947/2931600‑2931747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |