| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3451941 = | 61 (1.130) | 3 (0.060) | 3/252 | NT | 5.4% | coding (1506/2478 nt) | PP_3069 | outer membrane autotransporter |
| ? | NC_002947 | 3451985 = | 45 (0.860) | coding (1462/2478 nt) | PP_3069 | outer membrane autotransporter | |||||
AAAACAGCTGGTACCTGCGCTCGACGCTGGTTGCGCCACCCGCTCCAGCCCCTGTGCCGGCACCGGGCGAGCCGCCGGTGATCGCCCCAGCCGTCACCCCGCCCGTCGCTGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3452092‑3451941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAG > NC_002947/3451985‑3452085 AAAACAGCTGGTACCTGCGCTCGACGCTGGTTGCGCCACCCGCTCCAGCCCCTGTGCCGGCACCGGGCGAGCCGCCGGTGATCGCCCCAGCCGCCACCCCGCCCGTCGCTGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTG > 6:311862/1‑149 AAACAGCGGGTACCTGCGCTCGACGCTGGTTGCGCCACCCGCTCCAGCCCCTGTGCCGGCACCGGGCGAGCCGCCGGTGATCGCCCCAGCCGTCACCCCGCCCGTCGCTGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGC < 5:102825/149‑1 ACAGCTGGTACCTGCGCTCGACGCTGGTTGCGCCACCCGCTCCAGCCCCTGTGCCGGCACCGGGCGAGCCGCCGGTGATCGCCCCAGCCGTCACCCCGTCCGTCGCTGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGCAG < 1:259785/149‑1 ACAGCTGGTACCTGCGCTCGACGCTGGTTGCGCCACCCGCTCCAGCCCCTGTGCCGGCACCGGGCGAGCCGCCGGTGATCGCCCCAGCCGTCACCCCGCCCGTCGCTGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGCAG < 1:61866/149‑1 GTCGCTGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAG > 7:42928/1‑149 TGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCAGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGG > 5:122596/1‑112 TGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGCAGCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCAGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGG < 6:122596/112‑1 AAAACAGCTGGTACCTGCGCTCGACGCTGGTTGCGCCACCCGCTCCAGCCCCTGTGCCGGCACCGGGCGAGCCGCCGGTGATCGCCCCAGCCGTCACCCCGCCCGTCGCTGCGCCAGCGCCCGGCCAGGCCGAGCTGCCGGCGCCGGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3452092‑3451941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCGACGGGCGGGGTGACGGCTGGGGCGATCACCGGCGGCTCGCCCGGTGCCGGCACAGGGGCTGGAGCGGGTGGCGCAACCAGCGTCGAGCGCAGGTACCAG > NC_002947/3451985‑3452085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |